Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2108 ATTATGTACCAGAGTGGTAAAACAGAGCCGGATTTTGCTTTTCTCGACCCCATTCGCCGCCACTTGCTGGGGGAATCGGAGCCTGCCGCCGCCGTTCCCGTTCCCGGCGGCAGAGCCACTCCCATTTTTAACCGGACTGGTAGTTTCAATAGTTTGATCCCATGTCTCGCTGACAATTGGGGCGATTTGCCCCTCAAACTGGACGACTCTGAAGATATGCTTCTCGCCGCCGTTCTCCGGGACGCCGTCGGTGCTGGATGGGTTCCGTCGCTCAATCCCGGGTTGCTCGGAAGTTGCGATTTCGGGTTCTCGGCGGTGGTAAAGTCGGAGCCGGAGGTCAGGCTTCCGGTGAGCTTCCCGCCGATGCTTCCCGATGCGGCAGCAAAGCCGGTGGTGGTTCCGGAGAAAGGGAAGCATTACAGAGGAGTGCGGCAACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGATCCGGCGAAAAATGGTGCAAGGGTTTGGCTTGGAACTTATGAGACGGCGGAGGATGCCGCTCTAGCCTATGACCGAGCTGCTTACCGAATGCGGGGCTCTCGAGCTTTGCTCAATTTCCCTCTCCGTGTGAACTCCGGTGAACCCGAACCGGTTCGAGTCACGTCGAAGCGCTCCTCACCGGAGATTTCGTCGTCGCCTAAGGCGACGAGTGGGCTGCCAAAGCGACGGAAGAAGGTTGGCTCCGCCGCT 720 59.17 IMYQSGKTEPDFAFLDPIRRHLLGESEPAAAVPVPGGRATPIFNRTGSFNSLIPCLADNWGDLPLKLDDSEDMLLAAVLRDAVGAGWVPSLNPGLLGSCDFGFSAVVKSEPEVRLPVSFPPMLPDAAAKPVVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEISSSPKATSGLPKRRKKVGSAA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23337659 23338378 + MC06g1605 Mch6g2108 691555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2108 240 PANTHER DNA-BINDING DOMAIN 127 220 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Mch6g2108 240 MobiDBLite consensus disorder prediction 201 240 - -
Mch6g2108 240 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2108 240 SUPERFAMILY DNA-binding domain 139 199 IPR016177 GO:0003677(InterPro)
Mch6g2108 240 SMART rav1_2 139 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2108 240 Gene3D AP2/ERF domain 138 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2108 240 FunFam Ethylene-responsive transcription factor 2 138 198 - -
Mch6g2108 240 Pfam AP2 domain 139 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2108 240 MobiDBLite consensus disorder prediction 213 227 - -
Mch6g2108 240 CDD AP2 138 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2108 240 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2108 240 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0289 Mch-Chr10:1908009 Mch6g2108 Mch-Chr6:23337659 4.69E-47 dispersed
Mch5g0010 Mch-Chr5:75460 Mch6g2108 Mch-Chr6:23337659 2.83E-27 dispersed
Mch6g2108 Mch-Chr6:23337659 Mch6g2645 Mch-Chr6:28174377 1.94E-31 dispersed
Mch6g2108 Mch-Chr6:23337659 Mch6g2644 Mch-Chr6:28162549 2.75E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43613 PF00847 AP2 8.60E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2108 K09286 - csv:101221583 354.369