Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g2117 | ATGGGGAAGCATGGACCTTGCTGTCACTGTGGAGTTGCAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTATTATGCAATGCATGTGGATCGCGATGGAGGACGAAGGGAACGCTTGCAAACTATACCCCTTTGCATGCTCGGGCTGATCCTGATGAATATGAAGATAACAGGGTTTCCAGAGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAGAGAAAGCTGCAACAAGCAGATGGATCAATTGAGTGGAATTTTCCCGATCAATGTCGGGGTTTCCATAGAGTTTTGGATGAAGACGCAAGCAATAGATCCAGTTCCGGATCAGCCATATCTAATACTGAGAGCTGTGCCCATTTCAGCAGTGCGGATGCAAGCGATTTGACAGGTCCTGCTCAATCAATAGTATGGGAGACCATGGTGCCTTCCAGGAAGAGGACCTGCGTGAGTCGTCCAAAGCAATCGCCGGTTGAAAAACTAACTAAAGATCTATATTCTATTTTACATGAGCAGAGATCTTCCTATTTCTCCGGAACGTCTGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAAGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTGTCAGTTGATAACAAGCAATACTTGGTGAATGAGGTCCACTCCCCCCATTCTGCAACTGTTCGTGTACGTGGAGAAAACAAGGGTATGAATTTTCCGACATCTAGGATTGGGAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGAACAGATGAAAAGGCAGGACGACTCTCATCTCGAAAATTTACAAATTCTTGGAAACCATAACTCGCCCTTATGCGATGTAGATATAAATGACGTTATAAACTTCGGAGAGTTTGGGAGACAACTGACAAATGAAGAACAACAGCAATTAATGAAGTATCTACCACAGGTCGATGTCGCTGAACTTCCCGAGACCCTCAAGAGCATGTTTGACAGCTCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTCAGGGAGGGCGTTTTCGATGTCTCCTTCCTGGGGACGAAGACTGAAGACTGCAAGACTCTGAAAAGGCTTGTACTATATAATTCTTCAGAATCCAAATGGGTCGAACGATATCATCAACTAAAGAAGTGTAAAAATGGTTGCAAAGGATCTTTTCTTTCCAATGCCAATGCATCGGCATCGAGTAACTTCATGAATGTTAAGCGATTGCGTGAGAGCTACAATCAAAATATTCCAGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGTTCTTGCTTCAGTCCTAGAAGCTTATTTGCCTTGCCTCCGGATGGAAGCTCCCTCATGCTTGAATCTTTAAATTTCGCCGAAGCAAGTTCAGATCAAGATCTGTTGCTCGATGTGCGGTCAAATAGCTCGTTCCCGCAGGCCGAGCTCCTTCACCCGACCTCTCGCTCTGGGGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCCCATCTTGTTCATCACTAA | 1629 | 44.63 | MGKHGPCCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDNRVSRVKSISINKNKEVKLLKRKLQQADGSIEWNFPDQCRGFHRVLDEDASNRSSSGSAISNTESCAHFSSADASDLTGPAQSIVWETMVPSRKRTCVSRPKQSPVEKLTKDLYSILHEQRSSYFSGTSEDDLLFESEKPMVSVEIGHGSILIKHPSSIAREEESEASSVSVDNKQYLVNEVHSPHSATVRVRGENKGMNFPTSRIGKMKNPSGSGVQQEQMKRQDDSHLENLQILGNHNSPLCDVDINDVINFGEFGRQLTNEEQQQLMKYLPQVDVAELPETLKSMFDSSYFKENLTSFQQLLREGVFDVSFLGTKTEDCKTLKRLVLYNSSESKWVERYHQLKKCKNGCKGSFLSNANASASSNFMNVKRLRESYNQNIPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLNFAEASSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH | 542 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23410575 | 23416555 | + | MC06g1613 | Mch6g2117 | 691564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g2117 | 542 | MobiDBLite | consensus disorder prediction | 515 | 542 | - | - | |
Mch6g2117 | 542 | Pfam | GATA zinc finger | 7 | 41 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch6g2117 | 542 | ProSiteProfiles | GATA-type zinc finger domain profile. | 7 | 40 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch6g2117 | 542 | ProSiteProfiles | DEUBAD (DEUBiquitinase ADaptor) domain profile. | 298 | 410 | IPR044867 | - | |
Mch6g2117 | 542 | Gene3D | - | 288 | 387 | IPR038108 | - | |
Mch6g2117 | 542 | MobiDBLite | consensus disorder prediction | 515 | 536 | - | - | |
Mch6g2117 | 542 | Gene3D | - | 4 | 84 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Mch6g2117 | 542 | SMART | GATA_3 | 1 | 55 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch6g2117 | 542 | PANTHER | OSJNBB0038F03.10 PROTEIN | 1 | 373 | IPR044589 | - | |
Mch6g2117 | 542 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 45 | - | - | |
Mch6g2117 | 542 | MobiDBLite | consensus disorder prediction | 255 | 276 | - | - | |
Mch6g2117 | 542 | Pfam | Asx homology domain | 282 | 372 | IPR028020 | - | |
Mch6g2117 | 542 | CDD | ZnF_GATA | 6 | 51 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g1588 | Mch-Chr10:15975942 | Mch6g2117 | Mch-Chr6:23410575 | 2.84E-236 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43614 | PF13919 | ASXH | 1.60E-08 | No_clan | Mch | TF |
Pathway information
