Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2117 ATGGGGAAGCATGGACCTTGCTGTCACTGTGGAGTTGCAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTATTATGCAATGCATGTGGATCGCGATGGAGGACGAAGGGAACGCTTGCAAACTATACCCCTTTGCATGCTCGGGCTGATCCTGATGAATATGAAGATAACAGGGTTTCCAGAGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAGAGAAAGCTGCAACAAGCAGATGGATCAATTGAGTGGAATTTTCCCGATCAATGTCGGGGTTTCCATAGAGTTTTGGATGAAGACGCAAGCAATAGATCCAGTTCCGGATCAGCCATATCTAATACTGAGAGCTGTGCCCATTTCAGCAGTGCGGATGCAAGCGATTTGACAGGTCCTGCTCAATCAATAGTATGGGAGACCATGGTGCCTTCCAGGAAGAGGACCTGCGTGAGTCGTCCAAAGCAATCGCCGGTTGAAAAACTAACTAAAGATCTATATTCTATTTTACATGAGCAGAGATCTTCCTATTTCTCCGGAACGTCTGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAAGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTGTCAGTTGATAACAAGCAATACTTGGTGAATGAGGTCCACTCCCCCCATTCTGCAACTGTTCGTGTACGTGGAGAAAACAAGGGTATGAATTTTCCGACATCTAGGATTGGGAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGAACAGATGAAAAGGCAGGACGACTCTCATCTCGAAAATTTACAAATTCTTGGAAACCATAACTCGCCCTTATGCGATGTAGATATAAATGACGTTATAAACTTCGGAGAGTTTGGGAGACAACTGACAAATGAAGAACAACAGCAATTAATGAAGTATCTACCACAGGTCGATGTCGCTGAACTTCCCGAGACCCTCAAGAGCATGTTTGACAGCTCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTCAGGGAGGGCGTTTTCGATGTCTCCTTCCTGGGGACGAAGACTGAAGACTGCAAGACTCTGAAAAGGCTTGTACTATATAATTCTTCAGAATCCAAATGGGTCGAACGATATCATCAACTAAAGAAGTGTAAAAATGGTTGCAAAGGATCTTTTCTTTCCAATGCCAATGCATCGGCATCGAGTAACTTCATGAATGTTAAGCGATTGCGTGAGAGCTACAATCAAAATATTCCAGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGTTCTTGCTTCAGTCCTAGAAGCTTATTTGCCTTGCCTCCGGATGGAAGCTCCCTCATGCTTGAATCTTTAAATTTCGCCGAAGCAAGTTCAGATCAAGATCTGTTGCTCGATGTGCGGTCAAATAGCTCGTTCCCGCAGGCCGAGCTCCTTCACCCGACCTCTCGCTCTGGGGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCCCATCTTGTTCATCACTAA 1629 44.63 MGKHGPCCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDNRVSRVKSISINKNKEVKLLKRKLQQADGSIEWNFPDQCRGFHRVLDEDASNRSSSGSAISNTESCAHFSSADASDLTGPAQSIVWETMVPSRKRTCVSRPKQSPVEKLTKDLYSILHEQRSSYFSGTSEDDLLFESEKPMVSVEIGHGSILIKHPSSIAREEESEASSVSVDNKQYLVNEVHSPHSATVRVRGENKGMNFPTSRIGKMKNPSGSGVQQEQMKRQDDSHLENLQILGNHNSPLCDVDINDVINFGEFGRQLTNEEQQQLMKYLPQVDVAELPETLKSMFDSSYFKENLTSFQQLLREGVFDVSFLGTKTEDCKTLKRLVLYNSSESKWVERYHQLKKCKNGCKGSFLSNANASASSNFMNVKRLRESYNQNIPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLNFAEASSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23410575 23416555 + MC06g1613 Mch6g2117 691564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2117 542 MobiDBLite consensus disorder prediction 515 542 - -
Mch6g2117 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2117 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2117 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 410 IPR044867 -
Mch6g2117 542 Gene3D - 288 387 IPR038108 -
Mch6g2117 542 MobiDBLite consensus disorder prediction 515 536 - -
Mch6g2117 542 Gene3D - 4 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch6g2117 542 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2117 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 373 IPR044589 -
Mch6g2117 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Mch6g2117 542 MobiDBLite consensus disorder prediction 255 276 - -
Mch6g2117 542 Pfam Asx homology domain 282 372 IPR028020 -
Mch6g2117 542 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2117 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1588 Mch-Chr10:15975942 Mch6g2117 Mch-Chr6:23410575 2.84E-236 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0323 . 115 399 C2C2-Gata Transcription Factor Family AT5G25830 55.1 6.5e-71 264.6
Mch11g0766 . 83 352 C2C2-Gata Transcription Factor Family AT5G25830 52.0 1.7e-66 250.0
Mch8g1192 . 68 241 C2C2-Gata Transcription Factor Family AT2G45050 50.2 4.1e-44 175.3
Mch10g0751 . 27 316 C2C2-Gata Transcription Factor Family AT5G66320 51.0 7.1e-65 244.6
Mch1g1560 . 104 269 C2C2-Gata Transcription Factor Family AT4G36240 52.8 4.3e-40 161.8
Mch11g0766 . 71 351 C2C2-Gata Transcription Factor Family AT4G32890 51.0 6.9e-59 224.6
Mch10g1588 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.7 5.8e-135 478.0
Mch6g2117 . 1 518 C2C2-Gata Transcription Factor Family AT4G17570 52.4 3.2e-133 472.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43614 PF13919 ASXH 1.60E-08 No_clan Mch TF