Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2117 ATGGGGAAGCATGGACCTTGCTGTCACTGTGGAGTTGCAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTATTATGCAATGCATGTGGATCGCGATGGAGGACGAAGGGAACGCTTGCAAACTATACCCCTTTGCATGCTCGGGCTGATCCTGATGAATATGAAGATAACAGGGTTTCCAGAGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAGAGAAAGCTGCAACAAGCAGATGGATCAATTGAGTGGAATTTTCCCGATCAATGTCGGGGTTTCCATAGAGTTTTGGATGAAGACGCAAGCAATAGATCCAGTTCCGGATCAGCCATATCTAATACTGAGAGCTGTGCCCATTTCAGCAGTGCGGATGCAAGCGATTTGACAGGTCCTGCTCAATCAATAGTATGGGAGACCATGGTGCCTTCCAGGAAGAGGACCTGCGTGAGTCGTCCAAAGCAATCGCCGGTTGAAAAACTAACTAAAGATCTATATTCTATTTTACATGAGCAGAGATCTTCCTATTTCTCCGGAACGTCTGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAAGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTGTCAGTTGATAACAAGCAATACTTGGTGAATGAGGTCCACTCCCCCCATTCTGCAACTGTTCGTGTACGTGGAGAAAACAAGGGTATGAATTTTCCGACATCTAGGATTGGGAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGAACAGATGAAAAGGCAGGACGACTCTCATCTCGAAAATTTACAAATTCTTGGAAACCATAACTCGCCCTTATGCGATGTAGATATAAATGACGTTATAAACTTCGGAGAGTTTGGGAGACAACTGACAAATGAAGAACAACAGCAATTAATGAAGTATCTACCACAGGTCGATGTCGCTGAACTTCCCGAGACCCTCAAGAGCATGTTTGACAGCTCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTCAGGGAGGGCGTTTTCGATGTCTCCTTCCTGGGGACGAAGACTGAAGACTGCAAGACTCTGAAAAGGCTTGTACTATATAATTCTTCAGAATCCAAATGGGTCGAACGATATCATCAACTAAAGAAGTGTAAAAATGGTTGCAAAGGATCTTTTCTTTCCAATGCCAATGCATCGGCATCGAGTAACTTCATGAATGTTAAGCGATTGCGTGAGAGCTACAATCAAAATATTCCAGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGTTCTTGCTTCAGTCCTAGAAGCTTATTTGCCTTGCCTCCGGATGGAAGCTCCCTCATGCTTGAATCTTTAAATTTCGCCGAAGCAAGTTCAGATCAAGATCTGTTGCTCGATGTGCGGTCAAATAGCTCGTTCCCGCAGGCCGAGCTCCTTCACCCGACCTCTCGCTCTGGGGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCCCATCTTGTTCATCACTAA 1629 44.63 MGKHGPCCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDNRVSRVKSISINKNKEVKLLKRKLQQADGSIEWNFPDQCRGFHRVLDEDASNRSSSGSAISNTESCAHFSSADASDLTGPAQSIVWETMVPSRKRTCVSRPKQSPVEKLTKDLYSILHEQRSSYFSGTSEDDLLFESEKPMVSVEIGHGSILIKHPSSIAREEESEASSVSVDNKQYLVNEVHSPHSATVRVRGENKGMNFPTSRIGKMKNPSGSGVQQEQMKRQDDSHLENLQILGNHNSPLCDVDINDVINFGEFGRQLTNEEQQQLMKYLPQVDVAELPETLKSMFDSSYFKENLTSFQQLLREGVFDVSFLGTKTEDCKTLKRLVLYNSSESKWVERYHQLKKCKNGCKGSFLSNANASASSNFMNVKRLRESYNQNIPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLNFAEASSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23410575 23416555 + MC06g1613 Mch6g2117 691564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2117 542 MobiDBLite consensus disorder prediction 515 542 - -
Mch6g2117 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2117 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2117 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 410 IPR044867 -
Mch6g2117 542 Gene3D - 288 387 IPR038108 -
Mch6g2117 542 MobiDBLite consensus disorder prediction 515 536 - -
Mch6g2117 542 Gene3D - 4 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch6g2117 542 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2117 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 373 IPR044589 -
Mch6g2117 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Mch6g2117 542 MobiDBLite consensus disorder prediction 255 276 - -
Mch6g2117 542 Pfam Asx homology domain 282 372 IPR028020 -
Mch6g2117 542 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1588 Mch-Chr10:15975942 Mch6g2117 Mch-Chr6:23410575 2.84E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43614 PF13919 ASXH 1.60E-08 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2117 - - - 0.0