Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2170 ATGGCTGCTCCGGATTTAGGCAATCGCTATATTCACCAACTTCAGAGACCCGATTTCAATCTTCACCACCAACATCAACCGCATCAGCATCAGCAGCAACATCCTGACTCTCAATCCTACCATGACGATGAATCCCATCAACCGTTGGAATTCGTCGCCACTTCCACCGCCCCCGGCAGTGATGTGGTGGCCTCCCGCCGGCCGCGGGGGCGTCCACCGGGTTCTAAAAACAAGCCGAAGCCGCCAGTTATCATAACCCGGGAGAGCGCCAACACCCTGCGAGCTCATATTCTTGAGGTCGGTGGCGGCTGCGACGTCTTCGATAGCATCGCCACCTATGCCCGCCGCCGACAGAGAGGGATCTGCATCTTGAGCGGCAGTGGGACCGTGACGAATGTCAACTTGCGGCAGCCAACCGCGGCGGGAGCCGTGCTAACCCTACAAGGGAGGTTTGAGATATTATCGCTTACGGGATCTTTCTTGCCTCCGCCGGCTCCCCCTGGCGCCACCAGCCTGACTATCTACCTGGCCGGCGGGCAAGGGCAGGTGGTCGGCGGCAACGTGGTCGGGGAGCTGATGGCAGCGGGGCCAGTGACGATCATCGCGGCTTCGTTTACAAACGTAGCCTACGAGAGATTGCCATTGGAAGAACAAGAAGAAGATCAAGATCAAGAACAACTTCAGATGCAGCCGCCCACGTCTCAGGGCGGCGGCATCGGTGGCAGCAGTGGCGGAAACAACCCTTTTCCAGATCCATCCTCCGGGCTTCCTTTCTTAAATTTGCCCCTAAATATGCAGAACCAAATTCAGCTACCATTC 819 57.39 MAAPDLGNRYIHQLQRPDFNLHHQHQPHQHQQQHPDSQSYHDDESHQPLEFVATSTAPGSDVVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFDSIATYARRRQRGICILSGSGTVTNVNLRQPTAAGAVLTLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELMAAGPVTIIAASFTNVAYERLPLEEQEEDQDQEQLQMQPPTSQGGGIGGSSGGNNPFPDPSSGLPFLNLPLNMQNQIQLPF 273
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 24080895 24081713 + MC06g1661 Mch6g2170 691617
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2170 273 CDD DUF296 94 177 IPR005175 -
Mch6g2170 273 MobiDBLite consensus disorder prediction 1 84 - -
Mch6g2170 273 ProSiteProfiles PPC domain profile profile. 90 226 IPR005175 -
Mch6g2170 273 MobiDBLite consensus disorder prediction 217 260 - -
Mch6g2170 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 206 IPR005175 -
Mch6g2170 273 FunFam AT-hook motif nuclear-localized protein 93 221 - -
Mch6g2170 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 219 - -
Mch6g2170 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 265 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch6g2170 273 Gene3D - 93 227 - -
Mch6g2170 273 MobiDBLite consensus disorder prediction 225 250 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2170 Mch-Chr6:24080895 Mch7g0794 Mch-Chr7:12564553 1.03E-103 dispersed
Mch10g1642 Mch-Chr10:16557884 Mch6g2170 Mch-Chr6:24080895 3.30E-104 wgd
Mch5g0275 Mch-Chr5:1867047 Mch6g2170 Mch-Chr6:24080895 1.90E-105 wgd
Mch6g2170 Mch-Chr6:24080895 Mch7g0752 Mch-Chr7:12143320 7.40E-79 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2170 - - - 0.0