Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g2170 | ATGGCTGCTCCGGATTTAGGCAATCGCTATATTCACCAACTTCAGAGACCCGATTTCAATCTTCACCACCAACATCAACCGCATCAGCATCAGCAGCAACATCCTGACTCTCAATCCTACCATGACGATGAATCCCATCAACCGTTGGAATTCGTCGCCACTTCCACCGCCCCCGGCAGTGATGTGGTGGCCTCCCGCCGGCCGCGGGGGCGTCCACCGGGTTCTAAAAACAAGCCGAAGCCGCCAGTTATCATAACCCGGGAGAGCGCCAACACCCTGCGAGCTCATATTCTTGAGGTCGGTGGCGGCTGCGACGTCTTCGATAGCATCGCCACCTATGCCCGCCGCCGACAGAGAGGGATCTGCATCTTGAGCGGCAGTGGGACCGTGACGAATGTCAACTTGCGGCAGCCAACCGCGGCGGGAGCCGTGCTAACCCTACAAGGGAGGTTTGAGATATTATCGCTTACGGGATCTTTCTTGCCTCCGCCGGCTCCCCCTGGCGCCACCAGCCTGACTATCTACCTGGCCGGCGGGCAAGGGCAGGTGGTCGGCGGCAACGTGGTCGGGGAGCTGATGGCAGCGGGGCCAGTGACGATCATCGCGGCTTCGTTTACAAACGTAGCCTACGAGAGATTGCCATTGGAAGAACAAGAAGAAGATCAAGATCAAGAACAACTTCAGATGCAGCCGCCCACGTCTCAGGGCGGCGGCATCGGTGGCAGCAGTGGCGGAAACAACCCTTTTCCAGATCCATCCTCCGGGCTTCCTTTCTTAAATTTGCCCCTAAATATGCAGAACCAAATTCAGCTACCATTC | 819 | 57.39 | MAAPDLGNRYIHQLQRPDFNLHHQHQPHQHQQQHPDSQSYHDDESHQPLEFVATSTAPGSDVVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFDSIATYARRRQRGICILSGSGTVTNVNLRQPTAAGAVLTLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELMAAGPVTIIAASFTNVAYERLPLEEQEEDQDQEQLQMQPPTSQGGGIGGSSGGNNPFPDPSSGLPFLNLPLNMQNQIQLPF | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 24080895 | 24081713 | + | MC06g1661 | Mch6g2170 | 691617 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g2170 | 273 | CDD | DUF296 | 94 | 177 | IPR005175 | - | |
| Mch6g2170 | 273 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
| Mch6g2170 | 273 | ProSiteProfiles | PPC domain profile profile. | 90 | 226 | IPR005175 | - | |
| Mch6g2170 | 273 | MobiDBLite | consensus disorder prediction | 217 | 260 | - | - | |
| Mch6g2170 | 273 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 94 | 206 | IPR005175 | - | |
| Mch6g2170 | 273 | FunFam | AT-hook motif nuclear-localized protein | 93 | 221 | - | - | |
| Mch6g2170 | 273 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 90 | 219 | - | - | |
| Mch6g2170 | 273 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 33 | 265 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Mch6g2170 | 273 | Gene3D | - | 93 | 227 | - | - | |
| Mch6g2170 | 273 | MobiDBLite | consensus disorder prediction | 225 | 250 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g2170 | Mch-Chr6:24080895 | Mch7g0794 | Mch-Chr7:12564553 | 1.03E-103 | dispersed | |
| Mch10g1642 | Mch-Chr10:16557884 | Mch6g2170 | Mch-Chr6:24080895 | 3.30E-104 | wgd | |
| Mch5g0275 | Mch-Chr5:1867047 | Mch6g2170 | Mch-Chr6:24080895 | 1.90E-105 | wgd | |
| Mch6g2170 | Mch-Chr6:24080895 | Mch7g0752 | Mch-Chr7:12143320 | 7.40E-79 | wgd |
Pathway information