Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2172 ATGGATTCACTGGAAACTCCTCCTCCGCCACTTTCAGCAGCGTCCAACATGGCGGTCGGAGGACAAACGGCGTATTCGGCGGCCATGTCCAACGCTAACAACAATGCCTCCTCCACGATTGGTCTAAATCCGACTACCACTCAGATGATGGCACCTGCACCGCGATTCCCGTTCAACTCTGTGATCGCCCCTGCATCCGTGCCTTTGGATTCACTCAATGTTACTCCCTACGACGGATCGCATTCCGGCACGTTCAACATTGATTCCGGGAAGAAAAAGAGAGGCCGGCCCAGGAAGTACACGCCCGATGGTAACATTGCTTTGGGATTGGCACCTACCACCGTTGCGTCTTCTGTTGGTCACGGGGATTTAACCGCAACTCCTGATTCTGAACAGCCGGCCAAGAAAGCCAGGGGAAGACCGCCCGGCTCCGGAAAGAAGCAGATGAATGCTCATGGTTCAGGCGGTATTGGTTTTACTCCTCACGTTGTATTGGTGAAACCTGGAGAGGATGTTGCAGCCAAAATTGTGTCCTTCACACAGCAAGGACCCCGAGCTGTCTTTATTCTCTCTGCAAATGGTACCGTCAGTAGTGCTACCCTTCGACACCCAGCTACATCTGGTGGTTCCGTGACATATGAGGGCCAGTATGAGATCATCTCTCTATCAGGCTCCTTTTTGCTTTCGGAAAATAATGGAACTCGAAGTAGAACAGGTGGCTTGAGTGTGCTGCTGGCTGGGTCAGACGGACAGGTTCTTGGAGGTGGAGTTGCAGGAATGCTAATGGCAGGTTCCCAAGTACAGTTGATTGTGGGAAGTTTCCTCGAGGATGATAAAAAATCCAACTCAAGTATGCTGAATTCTGCATCTTCTGCTGGACCACCCCAAATGATAAACTTTGGTGCACCAGCAGCAACAGCGGCCAGCCCTCCATCGTTAGGGGCATCGAGCGGCGAGTCTTCTGCCGAAAATGGAGACAGCCCTCTTAATAGGCATCCTGGAATGTTCAACAATACCAGCCAGCCGATCAACGTGCAGATGTACCACCATTTATGGGCAGGGCAAACACAGCAGTGA 1077 51.9 MDSLETPPPPLSAASNMAVGGQTAYSAAMSNANNNASSTIGLNPTTTQMMAPAPRFPFNSVIAPASVPLDSLNVTPYDGSHSGTFNIDSGKKKRGRPRKYTPDGNIALGLAPTTVASSVGHGDLTATPDSEQPAKKARGRPPGSGKKQMNAHGSGGIGFTPHVVLVKPGEDVAAKIVSFTQQGPRAVFILSANGTVSSATLRHPATSGGSVTYEGQYEIISLSGSFLLSENNGTRSRTGGLSVLLAGSDGQVLGGGVAGMLMAGSQVQLIVGSFLEDDKKSNSSMLNSASSAGPPQMINFGAPAATAASPPSLGASSGESSAENGDSPLNRHPGMFNNTSQPINVQMYHHLWAGQTQQ 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24087948 24092575 - MC06g1663 Mch6g2172 691619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2172 358 MobiDBLite consensus disorder prediction 282 340 - -
Mch6g2172 358 ProSiteProfiles PPC domain profile profile. 155 295 IPR005175 -
Mch6g2172 358 CDD DUF296 160 274 IPR005175 -
Mch6g2172 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 276 - -
Mch6g2172 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 325 IPR039605 GO:0003680(InterPro)
Mch6g2172 358 MobiDBLite consensus disorder prediction 310 340 - -
Mch6g2172 358 Gene3D - 161 289 - -
Mch6g2172 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 274 IPR005175 -
Mch6g2172 358 MobiDBLite consensus disorder prediction 76 155 - -
Mch6g2172 358 SMART AT_hook_2 135 147 IPR017956 GO:0003677(InterPro)
Mch6g2172 358 SMART AT_hook_2 91 103 IPR017956 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2172 Mch-Chr6:24087948 Mch7g0683 Mch-Chr7:11542434 6.25E-65 dispersed
Mch11g0030 Mch-Chr11:223655 Mch6g2172 Mch-Chr6:24087948 1.78E-73 transposed
Mch6g2671 Mch-Chr6:28422144 Mch6g2172 Mch-Chr6:24087948 1.06E-57 transposed
Mch8g1968 Mch-Chr8:21661907 Mch6g2172 Mch-Chr6:24087948 2.15E-73 transposed
Mch10g1643 Mch-Chr10:16564785 Mch6g2172 Mch-Chr6:24087948 6.28E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2172 - - - 0.0