Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2179 ATGACGGACTACCGATTACCGCCCACCATGAATCTATGGGCGGATGAGAATCCCTCGATGATGGACGCATTCATGAGCGCCGATCTGAGTTCTTTCTGGGTTACGCCGACGCAGCCGCAGCCGCAGCCGCCGTATTCCTCTCTTCCCACCACTGCGGCGGACCCGAGCAAAGGCGTGGGTCAATCGCAATCGCAATCGCAGCCGGTTTTCAACCAGGAGACTCTGCAGCAGCGTCTCCAAGCCCTGATTGAAGGCGCTCGCGAGAGCTGGACCTACGCTATCTTCTGGCAGTCTTCGTACGACTACTCCGGCGCCTCCGTCCTCGGGTGGGGCGATGGGTACTACAAAGGCGAGGAAGATAAGGGCAAAGAGAAGGCCAAATCCACGACCTCGAAATCGGAGCAAGAGCACCGGAAGAAGGTACTCCGTGAGCTCAACTCCCTCATTTCTGGTTCCCCTTCCTCCGAAGACGACGCCGTCGACGAGGTCGTTACCGACACCGAGTGGTTCTTCTTGGTCTCCATGACCCAGTCCTTCATGACCGGCGTCGGATTGCCGGGACAGGCCTTCTTCGACTCCAGCCCTGTTTGGGTGGCCGGCTCGGATCGGCTCGCCGGCTCCTTCTGCGAACGAGCCCATCAGGGTCAGGTTTTCGGGTTGCAGACCATGGTGTGTATACCGTCCGCGAATGGAGTCGTCGAATTGGGGTCGAGTGAGGTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAACAATCTGGAGGTGGAAACCTGGCCAATCAGTGGTGTTGACCAAGGGGAGAACGACCCCTCTTCCCTTTGGATCACTGAGCCACCAAACGTCATTGAAATTAAGGATCCCCTCAATAATACAGTAGCGTCAGCTCCGGCTCCGGCTCCCGCTCCATCTCCATCTCCGGCTCCGAGTACCACAAATAGCCAGCAAGTTTCGAAAATTACGCACACAGAGAACCCCAAATCGAGCGTTGTAACTGGAACACCGAGCTCTGTTCCTTCCCAGAAGAGCCAACAGAGCCACCGACAGTCGCAGCCGGTTCACACCCAGAGCTTCTTCACCAGGGAATTAAACTTCTCTGAATTTGGGTACGATAACAGCAGTTTGAAAGACGGGAATTCGCATTCGCTGAAGCCGGAATCCGGCGAGATTCTGAATTTTGGGGAGAGTAAGAGGAGTTCTTACCCCAGCGCAGACAACTTAGCTTCGGGTAATTCCCAGTTTGCAGCTGATGAGAACAGGAAGAAGAGATCCCCCACTTCAAGGGGGAGTAACGAGGAGGGAATGCTTTCTTTCACTTCTGGCGTGATTGTTCCATCATCCGGGGCCGTGAAATCGAGCGGTTGCATTGGCGGCGACTCCGATCACTCGGACCTCGAAGCTTCAGTGATTCGTGAGGTTGAGAGTAGCAGAGTGGTGGAGCCGGAGAAACGGCCACGAAAGAGGGGCAGAAAGCCAGCAAATGGTAGAGAAGAACCACTGAATCACGTTGAAGCAGAGAGGCAGAGGAGAGAAAAGCTAAACCAAAGATTCTATGCTCTCCGTGCTGTGGTTCCTAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGGGATGCAATCTCTTACATCAACGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCGGACAAGGAGGAACTGGAGAAGCAATTGGAAGCAGTTAAGAAGTTGATGTCTAGTAAAGAATCTTCTTGCATATCAAGCTCAAGTGAACCCCCACCAGATCAAGACATAAAAGGATCAAACATCCATGGAAACAATAATGGTATCGAAACCGATATCGACGTGAAAATAATCAGTTGGGACGCGATGATCCGGATACAATCTAGTAAGAAAAACTACCCTGCCGCACGGCTGATGGCGGCTTTGGAGGACCTAGACTTGGATATCAACCACGCCAGCATTTCAGTTGTCAATGATCTAATGATCCAACAAGCCACTGTCAAAATGGGGAGTAGATTATACACTCAGGAGCAGCTAAGGATAGCTCTATTGTCGAAAATGGGCGCAACTCGG 2073 52.19 MTDYRLPPTMNLWADENPSMMDAFMSADLSSFWVTPTQPQPQPPYSSLPTTAADPSKGVGQSQSQSQPVFNQETLQQRLQALIEGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKEKAKSTTSKSEQEHRKKVLRELNSLISGSPSSEDDAVDEVVTDTEWFFLVSMTQSFMTGVGLPGQAFFDSSPVWVAGSDRLAGSFCERAHQGQVFGLQTMVCIPSANGVVELGSSEVIFQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWITEPPNVIEIKDPLNNTVASAPAPAPAPSPSPAPSTTNSQQVSKITHTENPKSSVVTGTPSSVPSQKSQQSHRQSQPVHTQSFFTRELNFSEFGYDNSSLKDGNSHSLKPESGEILNFGESKRSSYPSADNLASGNSQFAADENRKKRSPTSRGSNEEGMLSFTSGVIVPSSGAVKSSGCIGGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEELEKQLEAVKKLMSSKESSCISSSSEPPPDQDIKGSNIHGNNNGIETDIDVKIISWDAMIRIQSSKKNYPAARLMAALEDLDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALLSKMGATR 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24128359 24130431 - MC06g1670 Mch6g2179 691626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2179 691 PANTHER MYC 62 686 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Mch6g2179 691 MobiDBLite consensus disorder prediction 399 441 - -
Mch6g2179 691 MobiDBLite consensus disorder prediction 49 69 - -
Mch6g2179 691 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 75 255 IPR025610 -
Mch6g2179 691 MobiDBLite consensus disorder prediction 470 513 - -
Mch6g2179 691 MobiDBLite consensus disorder prediction 35 69 - -
Mch6g2179 691 Pfam Helix-loop-helix DNA-binding domain 507 553 IPR011598 GO:0046983(InterPro)
Mch6g2179 691 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 503 552 IPR011598 GO:0046983(InterPro)
Mch6g2179 691 SMART finulus 509 558 IPR011598 GO:0046983(InterPro)
Mch6g2179 691 MobiDBLite consensus disorder prediction 118 137 - -
Mch6g2179 691 MobiDBLite consensus disorder prediction 315 361 - -
Mch6g2179 691 MobiDBLite consensus disorder prediction 455 513 - -
Mch6g2179 691 Coils Coil 549 583 - -
Mch6g2179 691 CDD bHLH_AtAIB_like 500 575 - -
Mch6g2179 691 MobiDBLite consensus disorder prediction 581 605 - -
Mch6g2179 691 MobiDBLite consensus disorder prediction 298 361 - -
Mch6g2179 691 FunFam Transcription factor bHLH13 496 570 - -
Mch6g2179 691 Gene3D - 495 585 IPR036638 GO:0046983(InterPro)
Mch6g2179 691 MobiDBLite consensus disorder prediction 399 421 - -
Mch6g2179 691 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 506 575 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0487 Mch-Chr5:3250061 Mch6g2179 Mch-Chr6:24128359 1.44E-66 dispersed
Mch6g2013 Mch-Chr6:22513522 Mch6g2179 Mch-Chr6:24128359 1.18E-24 dispersed
Mch6g2179 Mch-Chr6:24128359 Mch8g2515 Mch-Chr8:28069737 1.55E-27 dispersed
Mch10g1749 Mch-Chr10:17405570 Mch6g2179 Mch-Chr6:24128359 8.79E-34 transposed
Mch7g0675 Mch-Chr7:11430891 Mch6g2179 Mch-Chr6:24128359 1.35E-23 transposed
Mch10g1654 Mch-Chr10:16658991 Mch6g2179 Mch-Chr6:24128359 7.06E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43620 PF14215 bHLH-MYC_N 2.10E-55 CL0161 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2179 K13422 - csv:101218165 966.452