Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2186 ATGGGGTCTTATGGCAGCCCTAAAACTTGGATTCCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGTAGTGTATATTGTCCTCAGTGGTGTTACATCATGTTTTCACCTCCACCACCCTTAGAGTTTCCAGATGATGATTCAGGCCCAAATTTTTCTCCTCTTGTCATTGCAATTATTGGAATTCTGGCAAGTGCTTTCCTTCTTGTAAGCTATTACACCATAATTTCAAAGTATTGTGGCAACACAAATCGCTTGTCTAGGACTGGAAATCATGACCCGAATGAGGAATTTGAAGACAATCACAACCCCACTCTTCACGAGCCGTGGCACATCGCGACAACTGGCTTGGATGAGGCATTGATCAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGACTGCGCTGTTTGCCTGAGTGAGTTTCAAGAAGATGAGAGCCTTAGGCTGTTGCCCAAATGCAGCCATGCTTTCCATCTTCAATGCATTGATACATGGTTCAAATCGCACTCCAATTGCCCGCTATGTCGTGCTTATATCGTCTCTTTCAGTGCTTCTTCTCCATTTCAACTGCCTCCAAGCACAGCAGTTCCCATAACTAGTGAGGCCATGCCAGAGACTTCTCATACAACTGACCATGATGCTGTTTCACAAGATTCTGGAAGAAGTTTTGGGAATGATGACCTAATGCAAGCCCATAATTGTGCAAAGAACTCATTTCGCGCTTTAAGTGACCTCGGAAATCTGGAGAAAAGAGATACTGTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCTGCCAAAACCACACCATAATTGCCGACATTCTACAGCTGAATGAAGATGGATTTGGAGCTATTGATGAATCAGGAAGCTCAGGTGATGTTGGATCATCCAAACATTCAGTGGGAGAAGACAGCAAGTCAAGTCATAGGAAAAGAATCTTGCATTGTGTGATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTCTCTCACAAGGCACGGAAGA 1074 43.2 MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLVSYYTIISKYCGNTNRLSRTGNHDPNEEFEDNHNPTLHEPWHIATTGLDEALIKSITVCKYKRGDGLVEGSDCAVCLSEFQEDESLRLLPKCSHAFHLQCIDTWFKSHSNCPLCRAYIVSFSASSPFQLPPSTAVPITSEAMPETSHTTDHDAVSQDSGRSFGNDDLMQAHNCAKNSFRALSDLGNLEKRDTVIELRDGRLQQIRRSISMDHCCQNHTIIADILQLNEDGFGAIDESGSSGDVGSSKHSVGEDSKSSHRKRILHCVMSPVSMKRSFSSGRFSLTRHGR 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24185296 24186369 + MC06g1674 Mch6g2186 691633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2186 358 MobiDBLite consensus disorder prediction 307 329 - -
Mch6g2186 358 SUPERFAMILY RING/U-box 131 191 - -
Mch6g2186 358 PANTHER RING-H2 FINGER PROTEIN ATL16 27 330 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Mch6g2186 358 CDD RING-H2_EL5-like 142 185 - -
Mch6g2186 358 FunFam RING-H2 finger protein ATL54 118 191 - -
Mch6g2186 358 Pfam Ring finger domain 142 185 IPR001841 -
Mch6g2186 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Mch6g2186 358 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Mch6g2186 358 SMART ring_2 143 184 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0939 Mch-Chr2:6319165 Mch6g2186 Mch-Chr6:24185296 1.33E-27 dispersed
Mch2g1145 Mch-Chr2:7788923 Mch6g2186 Mch-Chr6:24185296 9.54E-23 dispersed
Mch5g0088 Mch-Chr5:568030 Mch6g2186 Mch-Chr6:24185296 2.44E-35 dispersed
Mch6g0836 Mch-Chr6:5792004 Mch6g2186 Mch-Chr6:24185296 1.49E-25 dispersed
Mch6g2031 Mch-Chr6:22626219 Mch6g2186 Mch-Chr6:24185296 2.85E-30 dispersed
Mch6g2186 Mch-Chr6:24185296 Mch8g0235 Mch-Chr8:1544688 4.57E-40 dispersed
Mch6g2186 Mch-Chr6:24185296 Mch5g0230 Mch-Chr5:1521738 2.79E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2186 - - - 0.0