Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g2186 | ATGGGGTCTTATGGCAGCCCTAAAACTTGGATTCCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGTAGTGTATATTGTCCTCAGTGGTGTTACATCATGTTTTCACCTCCACCACCCTTAGAGTTTCCAGATGATGATTCAGGCCCAAATTTTTCTCCTCTTGTCATTGCAATTATTGGAATTCTGGCAAGTGCTTTCCTTCTTGTAAGCTATTACACCATAATTTCAAAGTATTGTGGCAACACAAATCGCTTGTCTAGGACTGGAAATCATGACCCGAATGAGGAATTTGAAGACAATCACAACCCCACTCTTCACGAGCCGTGGCACATCGCGACAACTGGCTTGGATGAGGCATTGATCAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGACTGCGCTGTTTGCCTGAGTGAGTTTCAAGAAGATGAGAGCCTTAGGCTGTTGCCCAAATGCAGCCATGCTTTCCATCTTCAATGCATTGATACATGGTTCAAATCGCACTCCAATTGCCCGCTATGTCGTGCTTATATCGTCTCTTTCAGTGCTTCTTCTCCATTTCAACTGCCTCCAAGCACAGCAGTTCCCATAACTAGTGAGGCCATGCCAGAGACTTCTCATACAACTGACCATGATGCTGTTTCACAAGATTCTGGAAGAAGTTTTGGGAATGATGACCTAATGCAAGCCCATAATTGTGCAAAGAACTCATTTCGCGCTTTAAGTGACCTCGGAAATCTGGAGAAAAGAGATACTGTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCTGCCAAAACCACACCATAATTGCCGACATTCTACAGCTGAATGAAGATGGATTTGGAGCTATTGATGAATCAGGAAGCTCAGGTGATGTTGGATCATCCAAACATTCAGTGGGAGAAGACAGCAAGTCAAGTCATAGGAAAAGAATCTTGCATTGTGTGATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTCTCTCACAAGGCACGGAAGA | 1074 | 43.2 | MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLVSYYTIISKYCGNTNRLSRTGNHDPNEEFEDNHNPTLHEPWHIATTGLDEALIKSITVCKYKRGDGLVEGSDCAVCLSEFQEDESLRLLPKCSHAFHLQCIDTWFKSHSNCPLCRAYIVSFSASSPFQLPPSTAVPITSEAMPETSHTTDHDAVSQDSGRSFGNDDLMQAHNCAKNSFRALSDLGNLEKRDTVIELRDGRLQQIRRSISMDHCCQNHTIIADILQLNEDGFGAIDESGSSGDVGSSKHSVGEDSKSSHRKRILHCVMSPVSMKRSFSSGRFSLTRHGR | 358 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24185296 | 24186369 | + | MC06g1674 | Mch6g2186 | 691633 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g2186 | 358 | MobiDBLite | consensus disorder prediction | 307 | 329 | - | - | |
Mch6g2186 | 358 | SUPERFAMILY | RING/U-box | 131 | 191 | - | - | |
Mch6g2186 | 358 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 27 | 330 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Mch6g2186 | 358 | CDD | RING-H2_EL5-like | 142 | 185 | - | - | |
Mch6g2186 | 358 | FunFam | RING-H2 finger protein ATL54 | 118 | 191 | - | - | |
Mch6g2186 | 358 | Pfam | Ring finger domain | 142 | 185 | IPR001841 | - | |
Mch6g2186 | 358 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 192 | IPR013083 | - | |
Mch6g2186 | 358 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 185 | IPR001841 | - | |
Mch6g2186 | 358 | SMART | ring_2 | 143 | 184 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0939 | Mch-Chr2:6319165 | Mch6g2186 | Mch-Chr6:24185296 | 1.33E-27 | dispersed | |
Mch2g1145 | Mch-Chr2:7788923 | Mch6g2186 | Mch-Chr6:24185296 | 9.54E-23 | dispersed | |
Mch5g0088 | Mch-Chr5:568030 | Mch6g2186 | Mch-Chr6:24185296 | 2.44E-35 | dispersed | |
Mch6g0836 | Mch-Chr6:5792004 | Mch6g2186 | Mch-Chr6:24185296 | 1.49E-25 | dispersed | |
Mch6g2031 | Mch-Chr6:22626219 | Mch6g2186 | Mch-Chr6:24185296 | 2.85E-30 | dispersed | |
Mch6g2186 | Mch-Chr6:24185296 | Mch8g0235 | Mch-Chr8:1544688 | 4.57E-40 | dispersed | |
Mch6g2186 | Mch-Chr6:24185296 | Mch5g0230 | Mch-Chr5:1521738 | 2.79E-85 | transposed |
Pathway information
