Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g2187 | ATGAGTCTTGATGCTCTTTCTAATTCCAATGACTTGTTCAACTTCATCATCTTCGACACCATCGCCGCAACGCCAAGCAACGACTCCCACCGCCACCCCGACTCGTCGGAGAACAGCTTGATCTTCTCCGACGAGCGTTTGAAACCCAATTACGCTGTGTCGAGAAATAAACACCGCTCCTCCGTCGACGCTGAAGGCAGTGGCATTCAACAAGGGAAGAAGAAGAGGAAGAGAAAGCCTAAAGTTTGTAAGAACAAAGAGGAGGCTGAAACACAGAGAATGACACACATTGCCGTTGAGAGGAACCGCCGTAAACAGATGAATGAGCATCTTGCTGTCTTACGTTCCCTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTGGGTGGTGCCGTTGAGTTTGTGAAGGAATTGGAGCATCTGTTGTCAACACTAGAAGCGAAGAAGCTGGAAAGTTTGGAGAAAGAAATGCAAGAAGAGAATGAAGATTCAGTGAGAGGGAAGTTGTTTTCATCAGTTTCTTCAGGCGCATCATTTTCACAGTTGTTGATGCATTCAACGGATCAAAACTCGAGCAAGTTCACATCGAAATCGAGGGCTTCTTCGGCTGAGATTGAAGTCACTTTGATTGAAACTCATGCAAACCTCAGAATTCTGTCCAGAAGAAGCCATAGACAGCTCTTGAAGCTCATTGCTGGCTTGCAGGCCCTTCGCCTCACCATTCTTCACCTCAATCTCACCCACTTCCACCCTTTGGTTCTTTACTCCATTAGTCTCAAGGTGGAAGAAGGATGCCAATTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTAAGAATAATTGAGGAAGAAGAAGGTGTCCTCCTGTGTTAA | 894 | 46.2 | MSLDALSNSNDLFNFIIFDTIAATPSNDSHRHPDSSENSLIFSDERLKPNYAVSRNKHRSSVDAEGSGIQQGKKKRKRKPKVCKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLESLEKEMQEENEDSVRGKLFSSVSSGASFSQLLMHSTDQNSSKFTSKSRASSAEIEVTLIETHANLRILSRRSHRQLLKLIAGLQALRLTILHLNLTHFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEEGVLLC | 297 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 24187244 | 24189834 | - | MC06g1675 | Mch6g2187 | 691634 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g2187 | 297 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 90 | 153 | IPR036638 | GO:0046983(InterPro) | |
| Mch6g2187 | 297 | Pfam | Helix-loop-helix DNA-binding domain | 92 | 143 | IPR011598 | GO:0046983(InterPro) | |
| Mch6g2187 | 297 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 91 | 142 | IPR011598 | GO:0046983(InterPro) | |
| Mch6g2187 | 297 | Gene3D | - | 90 | 169 | IPR036638 | GO:0046983(InterPro) | |
| Mch6g2187 | 297 | MobiDBLite | consensus disorder prediction | 54 | 91 | - | - | |
| Mch6g2187 | 297 | SMART | finulus | 97 | 148 | IPR011598 | GO:0046983(InterPro) | |
| Mch6g2187 | 297 | PANTHER | MAX DIMERIZATION, MAD | 47 | 287 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Mch6g2187 | 297 | Coils | Coil | 139 | 167 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g0002 | Mch-Chr5:12385 | Mch6g2187 | Mch-Chr6:24187244 | 9.70E-49 | dispersed | |
| Mch5g0633 | Mch-Chr5:4220237 | Mch6g2187 | Mch-Chr6:24187244 | 2.44E-22 | dispersed | |
| Mch6g2187 | Mch-Chr6:24187244 | Mch8g0236 | Mch-Chr8:1549988 | 4.20E-62 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43622 | PF00010 | HLH | 9.40E-11 | No_clan | Mch | TF |
Pathway information