Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2187 ATGAGTCTTGATGCTCTTTCTAATTCCAATGACTTGTTCAACTTCATCATCTTCGACACCATCGCCGCAACGCCAAGCAACGACTCCCACCGCCACCCCGACTCGTCGGAGAACAGCTTGATCTTCTCCGACGAGCGTTTGAAACCCAATTACGCTGTGTCGAGAAATAAACACCGCTCCTCCGTCGACGCTGAAGGCAGTGGCATTCAACAAGGGAAGAAGAAGAGGAAGAGAAAGCCTAAAGTTTGTAAGAACAAAGAGGAGGCTGAAACACAGAGAATGACACACATTGCCGTTGAGAGGAACCGCCGTAAACAGATGAATGAGCATCTTGCTGTCTTACGTTCCCTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTGGGTGGTGCCGTTGAGTTTGTGAAGGAATTGGAGCATCTGTTGTCAACACTAGAAGCGAAGAAGCTGGAAAGTTTGGAGAAAGAAATGCAAGAAGAGAATGAAGATTCAGTGAGAGGGAAGTTGTTTTCATCAGTTTCTTCAGGCGCATCATTTTCACAGTTGTTGATGCATTCAACGGATCAAAACTCGAGCAAGTTCACATCGAAATCGAGGGCTTCTTCGGCTGAGATTGAAGTCACTTTGATTGAAACTCATGCAAACCTCAGAATTCTGTCCAGAAGAAGCCATAGACAGCTCTTGAAGCTCATTGCTGGCTTGCAGGCCCTTCGCCTCACCATTCTTCACCTCAATCTCACCCACTTCCACCCTTTGGTTCTTTACTCCATTAGTCTCAAGGTGGAAGAAGGATGCCAATTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTAAGAATAATTGAGGAAGAAGAAGGTGTCCTCCTGTGTTAA 894 46.2 MSLDALSNSNDLFNFIIFDTIAATPSNDSHRHPDSSENSLIFSDERLKPNYAVSRNKHRSSVDAEGSGIQQGKKKRKRKPKVCKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLESLEKEMQEENEDSVRGKLFSSVSSGASFSQLLMHSTDQNSSKFTSKSRASSAEIEVTLIETHANLRILSRRSHRQLLKLIAGLQALRLTILHLNLTHFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEEGVLLC 297
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 24187244 24189834 - MC06g1675 Mch6g2187 691634
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2187 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 153 IPR036638 GO:0046983(InterPro)
Mch6g2187 297 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983(InterPro)
Mch6g2187 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983(InterPro)
Mch6g2187 297 Gene3D - 90 169 IPR036638 GO:0046983(InterPro)
Mch6g2187 297 MobiDBLite consensus disorder prediction 54 91 - -
Mch6g2187 297 SMART finulus 97 148 IPR011598 GO:0046983(InterPro)
Mch6g2187 297 PANTHER MAX DIMERIZATION, MAD 47 287 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch6g2187 297 Coils Coil 139 167 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0002 Mch-Chr5:12385 Mch6g2187 Mch-Chr6:24187244 9.70E-49 dispersed
Mch5g0633 Mch-Chr5:4220237 Mch6g2187 Mch-Chr6:24187244 2.44E-22 dispersed
Mch6g2187 Mch-Chr6:24187244 Mch8g0236 Mch-Chr8:1549988 4.20E-62 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43622 PF00010 HLH 9.40E-11 No_clan Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2187 - - - 0.0