Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2197 ATGAGAAACCAAGGCTCTGTTTTTGGCAATGAGGCAGAGGATGATCATTTGAAGAACAAGAAGAAGAAGAATGTTAATAATGAAGAGGAAGAAGAAGAAGAGGAAGATGGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGCAGCAAAATAAAGTTTCTTTTTTCAAACTGTTTTCTTTTGCTGATTTTTATGACTACTTACTCATGGGTGCTGGATCCATTGGAGCTTGCATCCATGGCGCCTCTGTTCCTGTCTTCTTCATCTACTTTGGAAAGCTCATTAATATCATTGGCATGGCTTACCTCTTCCCTGAGGAAGCTGCTCCCAAAGTTGCTAAGTACTCGCTGGACTTTTTATATCTGAGTGTGGCAATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGGGAGAGACAAGCAGCAAAAATGAGAATGGCATATTTGAGATCAATGTTGAATCAAGACATCAGCCTCTTTGACACTGAAGCTTCTACTGGTGAAGTCATTGCTGCCATCACCAGTGACATTGTTGTTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAATTTCATGCACTATATAAGCCGGTTTATATCAGGGTTTATCATTGGATTTATGAGGGTATGGCAAATTAGTCTTGTCACGTTATCAATCGTCCCATTAATTGCACTTGCTGGTGGTCTCTATGCTTTTGTGACAATTGGTCTTATTGCCAAAGTTCGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTCGGAAATGTAAGAACAGTTCAAGCATTTTCTGGGGAAGAAAGGGCAGTTAATTTATACAAAGGGGCCCTCAAGAATACCTACAAGTATGGGAGAAAAGCAGGCCTGGCTAAGGGCCTGGGCTTGGGCTCTATGCATTGTGTCCTTTTCTTATCATGGGCTCTCCTTGTTTGGTTCACCAGCATTGTTGTTCACAAGAACATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCGCTGGGGCAGGCTGCACCGGACATTTCTGCCTTTATTCGAGCAAAGGCAGCAGCCTATCCCATTTTTCAGATGATAGAGAGAAACACAGCCAGCAAAATCAGCTCCAAAACTGGCCAGAAACTAGACAAGCTTGATGGTCATATCCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTCCGGAAGTTATTATATTTAACAAGTTATCTCTTGACATTCCTGCTGGCAAGATTGTAGCTCTTGTGGGAGGGAGCGGGTCGGGAAAGAGCACAGTTATATCTTTGATCGAACGATTCTATGAACCACTTTCTGGAGAGATTCTATTAGATGGTAATAACATAAAGGAGCTGGACCTCAAGTGGCTTAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTTTTTGCTACTACCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTTGAAGACATCACACGGGCAGCGAAACTATCTGAGGCTTTATCATTTATAAATAACCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAGTTATCTGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATTGTTAAAAATCCATCAATCCTATTGTTGGATGAAGCAACAAGTGCACTCGATGCGGAATCTGAGAAGAGTGTTCAAGAAGCACTTGATCGTGTCATGGTTGGCCGAACGACTGTTGTGGTGGCTCATCGCCTATCTACCATAAGGAATGCAGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTTGAAACTGGAAGCCACGATGAGCTCATTTCAAAGCCAGATAGTGTCTATGCATCACTTGTCCAGTTCCAAGAGTCAGCATCTCTGCAACGCCATCCCTCAATCGGACAGTTGGGTCGACCACCGAGAGAAACATTTTGGTTAAAGAATCAGTTCACTTCTTGTTTAACTGTTCCTATTTGGCTAACTTGTAGTATAAAGTATTCCCGAGAATTATCTCGTACTACAACAAGCTTTGGTGCGAGCTTTCGCTCTGAAAAAGAATCTCTTGGACGGATTGGAGTCAATGGAATGGAAATTGAGAAATCAAAGCATGTTTCAGCAAGAAGACTTTACTCCATGGTTGGACCGGACTGGATGTATGGAGTCGTTGGCATCATTGGAGCATTTGTTACTGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAAGCTCTTGTTGCTTTTTATATGGACTGGGATACAACTTGCCATGAGATAAAGAGAATAGCTTTGCTTTTCTGTCTTGGTGCGGTTTTAACCATCACCTTTCATGCTGTTGAGCATCTCTGCTTTGGAATTATGGGAGAGCGACTCACCCTTCGAGTTCGGGAAATGATGTTTCATGCTCTTTTGAGAAACGAGATAGGATGGTTTGATGATATGAACAACACAAGTGCTATGCTTTCATCACGTCTAGAAACCGATGCAACTTTGTTACGAACTATAGTTGTTGATCGCTCTACCATTCTTCTGCAGAATTTAGCGATGGTCGTTACATCGTTCATCATTGCTTTCATATTAAATTGGAGAATCTCTCTAGTTGTCCTGGCCACTTATCCATTGATAATTAGTGGTCACATTAGCGAGAAACTTTTTATGAAAGGCTACGGTGGAAACTTGAGCAAAGCATACCTGAAAGCCAACACGCTGGCAGGCGAGGCAGTTGGCAACATTAGAACTGTTGCTGCATTTTGTTCAGAGGAGAAGGTCCTTGATCTGTATGCTAAAGAGCTCGTTGAACCGTCGAAACGTTCGTTTAAACGCGGACAGATTGCTGGAATATTCTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTATGGCCTGGCCTTGTGGTACGGTTCGGTTTTGATGGGACAGGGGCTTGCTAGCTTCAAATCCATTATGAAATCGTTTATGGTTCTGATAGTAACTGCACTGGCAATGGGTGAGACTTTGGCACTGGCCCCTGACCTTTTGAAAGGAAACCAAATGGTGGCATCTGTGTTTGAGGTGATGGATCGACAGACAGAGGTGTCTGGTGATGTCGGTGAAGAGCCAAATGTTGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCCTCAAGACCAGATGTTTTGATCTTCAGAGACTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTGGTTGGGCAAAGTGGTTCGGGTAAAAGCTCGGTCCTATCTCTTATACTGCGATTTTATGATCCAATAGCTGGGAAGGTGATGATCGATGGAAAAGATATAAAGAAACTCAAGCTCAAATCTCTCAGGAAGCACATTGGCCTCGTCCAACAGGAACCAGCTCTTTTCGCCACATCGATTTACGAGAACATTCTCTACGGGAAAGAAGGAGCTTCAGAAGCGGAAGTATTCGAAGCAGCAAGGCTCGCCAATGCACACAACTTCATCAGCGCTCTCCCGGAAGGCTACTCGACCAAAGTAGGCGAAAGAGGGATCCAACTCTCGGGCGGGCAACGACAAAGGATAGCGATCGCCAGAGCAGTCCTGAAGAACCCGGAAATCCTACTACTTGACGAGGCCACGAGTGCTCTCGATGTTGAATCGGAACGCGTGGTTCAGCAAGCCTTAGACAGACTGATGAAGAACAGAACAACAGTGGTGGTGGCACACAGGCTTTCCACTATTAAAAATTGTGACCAAATCTCAGTGATCCAAAATGGAAAGATAGTGGAACAAGGGACTCATTCAAGCCTTTCTGAGAACAAGAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAACACACTCAAGTGA 3897 43.78 MRNQGSVFGNEAEDDHLKNKKKKNVNNEEEEEEEEDGEKKKKKKKKKKKEQQNKVSFFKLFSFADFYDYLLMGAGSIGACIHGASVPVFFIYFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFMHYISRFISGFIIGFMRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFSGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFQMIERNTASKISSKTGQKLDKLDGHIQFKDVNFSYPSRPEVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQESASLQRHPSIGQLGRPPRETFWLKNQFTSCLTVPIWLTCSIKYSRELSRTTTSFGASFRSEKESLGRIGVNGMEIEKSKHVSARRLYSMVGPDWMYGVVGIIGAFVTGSQMPLFALGVSQALVAFYMDWDTTCHEIKRIALLFCLGAVLTITFHAVEHLCFGIMGERLTLRVREMMFHALLRNEIGWFDDMNNTSAMLSSRLETDATLLRTIVVDRSTILLQNLAMVVTSFIIAFILNWRISLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSKRSFKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEEPNVVEGTIELRSVEFSYPSRPDVLIFRDFNLKVRAGKSIALVGQSGSGKSSVLSLILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAARLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTVVVAHRLSTIKNCDQISVIQNGKIVEQGTHSSLSENKNGAYYKLINIQQQQQNTLK 1298
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 24238790 24248494 - MC06g1684 Mch6g2197 691644
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2197 1298 SMART AAA_5 423 615 IPR003593 GO:0016887(InterPro)
Mch6g2197 1298 SMART AAA_5 1079 1251 IPR003593 GO:0016887(InterPro)
Mch6g2197 1298 CDD ABC_6TM_Pgp_ABCB1_D2_like 722 1037 - -
Mch6g2197 1298 Gene3D ABC transporter type 1, transmembrane domain 121 964 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch6g2197 1298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch6g2197 1298 ProSitePatterns ABC transporters family signature. 1191 1205 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch6g2197 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 634 IPR027417 -
Mch6g2197 1298 Gene3D - 394 681 IPR027417 -
Mch6g2197 1298 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 361 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch6g2197 1298 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 733 1019 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch6g2197 1298 Pfam ABC transporter transmembrane region 77 344 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch6g2197 1298 Pfam ABC transporter transmembrane region 734 1004 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch6g2197 1298 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch6g2197 1298 MobiDBLite consensus disorder prediction 9 28 - -
Mch6g2197 1298 Pfam ABC transporter 415 563 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch6g2197 1298 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Mch6g2197 1298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1052 1288 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch6g2197 1298 SUPERFAMILY ABC transporter transmembrane region 60 366 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch6g2197 1298 PANTHER ABC TRANSPORTER B FAMILY 18 640 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Mch6g2197 1298 FunFam ABC transporter B family member 4 1042 1295 - -
Mch6g2197 1298 SUPERFAMILY ABC transporter transmembrane region 714 1033 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch6g2197 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1046 1290 IPR027417 -
Mch6g2197 1298 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 369 - -
Mch6g2197 1298 MobiDBLite consensus disorder prediction 1 47 - -
Mch6g2197 1298 CDD ABC_MTABC3_MDL1_MDL2 1052 1286 - -
Mch6g2197 1298 Coils Coil 18 54 - -
Mch6g2197 1298 Gene3D - 1042 1298 IPR027417 -
Mch6g2197 1298 Gene3D ABC transporter type 1, transmembrane domain 7 109 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch6g2197 1298 FunFam ABC transporter B family member 1 386 635 - -
Mch6g2197 1298 Pfam ABC transporter 1071 1219 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0780 Mch-Chr2:5367176 Mch6g2197 Mch-Chr6:24238790 5.46E-61 dispersed
Mch4g2109 Mch-Chr4:23175298 Mch6g2197 Mch-Chr6:24238790 0 dispersed
Mch5g1729 Mch-Chr5:17962648 Mch6g2197 Mch-Chr6:24238790 0 dispersed
Mch6g0467 Mch-Chr6:3108792 Mch6g2197 Mch-Chr6:24238790 6.91E-36 dispersed
Mch6g2197 Mch-Chr6:24238790 Mch8g2557 Mch-Chr8:28659189 0 dispersed
Mch6g2197 Mch-Chr6:24238790 Mch8g2193 Mch-Chr8:24977204 1.10E-53 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2197 K05658 - csv:101219304 2192.93