Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g2197 | ATGAGAAACCAAGGCTCTGTTTTTGGCAATGAGGCAGAGGATGATCATTTGAAGAACAAGAAGAAGAAGAATGTTAATAATGAAGAGGAAGAAGAAGAAGAGGAAGATGGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGCAGCAAAATAAAGTTTCTTTTTTCAAACTGTTTTCTTTTGCTGATTTTTATGACTACTTACTCATGGGTGCTGGATCCATTGGAGCTTGCATCCATGGCGCCTCTGTTCCTGTCTTCTTCATCTACTTTGGAAAGCTCATTAATATCATTGGCATGGCTTACCTCTTCCCTGAGGAAGCTGCTCCCAAAGTTGCTAAGTACTCGCTGGACTTTTTATATCTGAGTGTGGCAATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGGGAGAGACAAGCAGCAAAAATGAGAATGGCATATTTGAGATCAATGTTGAATCAAGACATCAGCCTCTTTGACACTGAAGCTTCTACTGGTGAAGTCATTGCTGCCATCACCAGTGACATTGTTGTTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAATTTCATGCACTATATAAGCCGGTTTATATCAGGGTTTATCATTGGATTTATGAGGGTATGGCAAATTAGTCTTGTCACGTTATCAATCGTCCCATTAATTGCACTTGCTGGTGGTCTCTATGCTTTTGTGACAATTGGTCTTATTGCCAAAGTTCGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTCGGAAATGTAAGAACAGTTCAAGCATTTTCTGGGGAAGAAAGGGCAGTTAATTTATACAAAGGGGCCCTCAAGAATACCTACAAGTATGGGAGAAAAGCAGGCCTGGCTAAGGGCCTGGGCTTGGGCTCTATGCATTGTGTCCTTTTCTTATCATGGGCTCTCCTTGTTTGGTTCACCAGCATTGTTGTTCACAAGAACATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCGCTGGGGCAGGCTGCACCGGACATTTCTGCCTTTATTCGAGCAAAGGCAGCAGCCTATCCCATTTTTCAGATGATAGAGAGAAACACAGCCAGCAAAATCAGCTCCAAAACTGGCCAGAAACTAGACAAGCTTGATGGTCATATCCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTCCGGAAGTTATTATATTTAACAAGTTATCTCTTGACATTCCTGCTGGCAAGATTGTAGCTCTTGTGGGAGGGAGCGGGTCGGGAAAGAGCACAGTTATATCTTTGATCGAACGATTCTATGAACCACTTTCTGGAGAGATTCTATTAGATGGTAATAACATAAAGGAGCTGGACCTCAAGTGGCTTAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTTTTTGCTACTACCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTTGAAGACATCACACGGGCAGCGAAACTATCTGAGGCTTTATCATTTATAAATAACCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAGTTATCTGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATTGTTAAAAATCCATCAATCCTATTGTTGGATGAAGCAACAAGTGCACTCGATGCGGAATCTGAGAAGAGTGTTCAAGAAGCACTTGATCGTGTCATGGTTGGCCGAACGACTGTTGTGGTGGCTCATCGCCTATCTACCATAAGGAATGCAGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTTGAAACTGGAAGCCACGATGAGCTCATTTCAAAGCCAGATAGTGTCTATGCATCACTTGTCCAGTTCCAAGAGTCAGCATCTCTGCAACGCCATCCCTCAATCGGACAGTTGGGTCGACCACCGAGAGAAACATTTTGGTTAAAGAATCAGTTCACTTCTTGTTTAACTGTTCCTATTTGGCTAACTTGTAGTATAAAGTATTCCCGAGAATTATCTCGTACTACAACAAGCTTTGGTGCGAGCTTTCGCTCTGAAAAAGAATCTCTTGGACGGATTGGAGTCAATGGAATGGAAATTGAGAAATCAAAGCATGTTTCAGCAAGAAGACTTTACTCCATGGTTGGACCGGACTGGATGTATGGAGTCGTTGGCATCATTGGAGCATTTGTTACTGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAAGCTCTTGTTGCTTTTTATATGGACTGGGATACAACTTGCCATGAGATAAAGAGAATAGCTTTGCTTTTCTGTCTTGGTGCGGTTTTAACCATCACCTTTCATGCTGTTGAGCATCTCTGCTTTGGAATTATGGGAGAGCGACTCACCCTTCGAGTTCGGGAAATGATGTTTCATGCTCTTTTGAGAAACGAGATAGGATGGTTTGATGATATGAACAACACAAGTGCTATGCTTTCATCACGTCTAGAAACCGATGCAACTTTGTTACGAACTATAGTTGTTGATCGCTCTACCATTCTTCTGCAGAATTTAGCGATGGTCGTTACATCGTTCATCATTGCTTTCATATTAAATTGGAGAATCTCTCTAGTTGTCCTGGCCACTTATCCATTGATAATTAGTGGTCACATTAGCGAGAAACTTTTTATGAAAGGCTACGGTGGAAACTTGAGCAAAGCATACCTGAAAGCCAACACGCTGGCAGGCGAGGCAGTTGGCAACATTAGAACTGTTGCTGCATTTTGTTCAGAGGAGAAGGTCCTTGATCTGTATGCTAAAGAGCTCGTTGAACCGTCGAAACGTTCGTTTAAACGCGGACAGATTGCTGGAATATTCTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTATGGCCTGGCCTTGTGGTACGGTTCGGTTTTGATGGGACAGGGGCTTGCTAGCTTCAAATCCATTATGAAATCGTTTATGGTTCTGATAGTAACTGCACTGGCAATGGGTGAGACTTTGGCACTGGCCCCTGACCTTTTGAAAGGAAACCAAATGGTGGCATCTGTGTTTGAGGTGATGGATCGACAGACAGAGGTGTCTGGTGATGTCGGTGAAGAGCCAAATGTTGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCCTCAAGACCAGATGTTTTGATCTTCAGAGACTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTGGTTGGGCAAAGTGGTTCGGGTAAAAGCTCGGTCCTATCTCTTATACTGCGATTTTATGATCCAATAGCTGGGAAGGTGATGATCGATGGAAAAGATATAAAGAAACTCAAGCTCAAATCTCTCAGGAAGCACATTGGCCTCGTCCAACAGGAACCAGCTCTTTTCGCCACATCGATTTACGAGAACATTCTCTACGGGAAAGAAGGAGCTTCAGAAGCGGAAGTATTCGAAGCAGCAAGGCTCGCCAATGCACACAACTTCATCAGCGCTCTCCCGGAAGGCTACTCGACCAAAGTAGGCGAAAGAGGGATCCAACTCTCGGGCGGGCAACGACAAAGGATAGCGATCGCCAGAGCAGTCCTGAAGAACCCGGAAATCCTACTACTTGACGAGGCCACGAGTGCTCTCGATGTTGAATCGGAACGCGTGGTTCAGCAAGCCTTAGACAGACTGATGAAGAACAGAACAACAGTGGTGGTGGCACACAGGCTTTCCACTATTAAAAATTGTGACCAAATCTCAGTGATCCAAAATGGAAAGATAGTGGAACAAGGGACTCATTCAAGCCTTTCTGAGAACAAGAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAACACACTCAAGTGA | 3897 | 43.78 | MRNQGSVFGNEAEDDHLKNKKKKNVNNEEEEEEEEDGEKKKKKKKKKKKEQQNKVSFFKLFSFADFYDYLLMGAGSIGACIHGASVPVFFIYFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFMHYISRFISGFIIGFMRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFSGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFQMIERNTASKISSKTGQKLDKLDGHIQFKDVNFSYPSRPEVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQESASLQRHPSIGQLGRPPRETFWLKNQFTSCLTVPIWLTCSIKYSRELSRTTTSFGASFRSEKESLGRIGVNGMEIEKSKHVSARRLYSMVGPDWMYGVVGIIGAFVTGSQMPLFALGVSQALVAFYMDWDTTCHEIKRIALLFCLGAVLTITFHAVEHLCFGIMGERLTLRVREMMFHALLRNEIGWFDDMNNTSAMLSSRLETDATLLRTIVVDRSTILLQNLAMVVTSFIIAFILNWRISLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSKRSFKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEEPNVVEGTIELRSVEFSYPSRPDVLIFRDFNLKVRAGKSIALVGQSGSGKSSVLSLILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAARLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTVVVAHRLSTIKNCDQISVIQNGKIVEQGTHSSLSENKNGAYYKLINIQQQQQNTLK | 1298 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 24238790 | 24248494 | - | MC06g1684 | Mch6g2197 | 691644 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g2197 | 1298 | SMART | AAA_5 | 423 | 615 | IPR003593 | GO:0016887(InterPro) | |
| Mch6g2197 | 1298 | SMART | AAA_5 | 1079 | 1251 | IPR003593 | GO:0016887(InterPro) | |
| Mch6g2197 | 1298 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 722 | 1037 | - | - | |
| Mch6g2197 | 1298 | Gene3D | ABC transporter type 1, transmembrane domain | 121 | 964 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch6g2197 | 1298 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 396 | 632 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch6g2197 | 1298 | ProSitePatterns | ABC transporters family signature. | 1191 | 1205 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch6g2197 | 1298 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 388 | 634 | IPR027417 | - | |
| Mch6g2197 | 1298 | Gene3D | - | 394 | 681 | IPR027417 | - | |
| Mch6g2197 | 1298 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 74 | 361 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Mch6g2197 | 1298 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 733 | 1019 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Mch6g2197 | 1298 | Pfam | ABC transporter transmembrane region | 77 | 344 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Mch6g2197 | 1298 | Pfam | ABC transporter transmembrane region | 734 | 1004 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Mch6g2197 | 1298 | ProSitePatterns | ABC transporters family signature. | 535 | 549 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch6g2197 | 1298 | MobiDBLite | consensus disorder prediction | 9 | 28 | - | - | |
| Mch6g2197 | 1298 | Pfam | ABC transporter | 415 | 563 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch6g2197 | 1298 | CDD | ABC_MTABC3_MDL1_MDL2 | 396 | 634 | - | - | |
| Mch6g2197 | 1298 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1052 | 1288 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch6g2197 | 1298 | SUPERFAMILY | ABC transporter transmembrane region | 60 | 366 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch6g2197 | 1298 | PANTHER | ABC TRANSPORTER B FAMILY | 18 | 640 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Mch6g2197 | 1298 | FunFam | ABC transporter B family member 4 | 1042 | 1295 | - | - | |
| Mch6g2197 | 1298 | SUPERFAMILY | ABC transporter transmembrane region | 714 | 1033 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch6g2197 | 1298 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1046 | 1290 | IPR027417 | - | |
| Mch6g2197 | 1298 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 72 | 369 | - | - | |
| Mch6g2197 | 1298 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Mch6g2197 | 1298 | CDD | ABC_MTABC3_MDL1_MDL2 | 1052 | 1286 | - | - | |
| Mch6g2197 | 1298 | Coils | Coil | 18 | 54 | - | - | |
| Mch6g2197 | 1298 | Gene3D | - | 1042 | 1298 | IPR027417 | - | |
| Mch6g2197 | 1298 | Gene3D | ABC transporter type 1, transmembrane domain | 7 | 109 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Mch6g2197 | 1298 | FunFam | ABC transporter B family member 1 | 386 | 635 | - | - | |
| Mch6g2197 | 1298 | Pfam | ABC transporter | 1071 | 1219 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g0780 | Mch-Chr2:5367176 | Mch6g2197 | Mch-Chr6:24238790 | 5.46E-61 | dispersed | |
| Mch4g2109 | Mch-Chr4:23175298 | Mch6g2197 | Mch-Chr6:24238790 | 0 | dispersed | |
| Mch5g1729 | Mch-Chr5:17962648 | Mch6g2197 | Mch-Chr6:24238790 | 0 | dispersed | |
| Mch6g0467 | Mch-Chr6:3108792 | Mch6g2197 | Mch-Chr6:24238790 | 6.91E-36 | dispersed | |
| Mch6g2197 | Mch-Chr6:24238790 | Mch8g2557 | Mch-Chr8:28659189 | 0 | dispersed | |
| Mch6g2197 | Mch-Chr6:24238790 | Mch8g2193 | Mch-Chr8:24977204 | 1.10E-53 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch6g2197 | K05658 | - | csv:101219304 | 2192.93 |