Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2205 ATGTATGGGGATTGCCAAGTGATGTCAAGCAATATGGGAGGGAATATGGTTTCCTCTGAATCTATCTTCTCTTCTCCCATTCAAAACCCTAATTTCAACTTCATGTCCAATTTCCAACATTTTCCTTCCATTGTTCCAAAGGAAGAAAATGGGCTGATGATGAGATCAGGGAAAGACGATATGGAAAGTGGGTCTGGAAGTGAACAGATTGTTGAAGAAAACGTGGCAGGAATTGAAATGGAGAGCAATGATCATAACATTATTCTTCAGCAAAATCAGAAGAAAAAACGCTATCATAGGCACACTGCTCGCCAGATCCAAGAAATGGAAACTTTGTTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTTAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTCAAATTTTGGTTCCAAAACCGCAGAACCCAAATGAAGGCACAACAAGACAGAGCTGACAATGTGATACTTAGGGCAGAGAATGAGACCTTAAAGAATGAGAATTATAGGCTGCAAAGTGCCCTAAGAAATATAATATGCCCTAGCTGTGGAGGGCAAAGCATCTTGGGGGAGCCCAGCTTGGATGAACAGCAGCTTCGTCTTGAGAATGCAAGACTAAGGGAACAGTTAGAACAAGTTTGCTCCTTGACCTCAAGATACACTGGCCGTCCAATCCAAGGGATGCCCTCCACAGCTCCTCTAATGGCACCTTCGTTGGATTTGGACATGAACATCTACTCAAGGCAATACACAGAGGCCATGGTTTCTTCCGGGGACATGATCATGCCGCTTCCGTCGATGCTCCCACCCGAGGCCGCCCACTTCCCGGAGGGCGGCCTATTAATCGAGGAGGAAAAAACACTCGCAATGGACCTCGCTGTGTCGTCCATGGCTGAACTCGTGAAGATGTGCCGCTCGACCGAACCGCTCTGGCTCCGAGACACGGAGAGCGGCAAGGAAGTCCTAAATGTAGAAGAGCACGCCAGGATGTTTCCATGGCCACTGAACCTCAAGCAACACCTCACAGATGAATTCACTACTGAAGCCACTCGCCACAGCGCGGTTGTCATAATGAATAGCATCACTCTCGTCGACGCTTTTCTCGATGCAAACAAATGGATGGAGCTGTTCCCTTCAATCGTGGCTAGGGCAAAAACTGTGCAAGTAATTTCATCGAGCGTCTCCGGGCATGCCAGTGGCTCCCTTCAGCTGATGTACGCAGAGCTTCAGAGTCTGTCTCCACTGATTCCGACGAGAGAGGCCCATTTCCTCCGGTGCTGCCAGCAGAACGCGGAGGAGGGAAGCTGGGCCGTCGTCGATTTTCCGATCGACAGTTTCCACGACGGCCTGCAGCACTCGTTTCCCAGATACAGGAGAAGGCCCTCCGGCTGCATAATCCAAGACATGCCCAATGGCTATTCCAGGGTTACATGGGTGGAGCACGCAGAGATAGAAGAGAAGCCGATCCATCAAATATTCAATAACTTGGTTCAAAGTGGAATGGCTTTTGGGGCAAATCGGTGGTTGGCTATTTTGCAGAGACAATGCGAGAGAATTGCGAGCCTCATGGCTAGAAATATTTCTGACCTCGGAGTGATTCCTTCGCCAGAAGCAAGACAGAACCTAATGAAACTGGCACAGAGGATGATCAGAACTTTCTCCCTCAACATAAGCACCTCCGGCGGCCAATCCTGGACTGCCCTATCTGATTCTCCCGACGATACCGTCCGTATAACCACTCGCAAAATCGTCGAGCCCGGCCAGCCCAATGGTGTTATTCTCAGCGCCGTCTCCACCACCTGGCTTCCTTATCCTCCCTACCGGGTCTTCGACCTCCTTCGAGATGAACGACGCCGATCCCAGTTAGAGGTTCTTTCTAATGGAAACTCGTTGCACGAGGTGGCTCACATCGCCAATGGATCCCACCCGGGAAATTGCATCTCTCTACTTCGTATCAATGTGGCTAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGTTGTACGGACCAGTCCGGCAGCCTCGTCGTCTACTCGACGATCGACGTCGACTCGATTCAGCTAGCCATGAGCGGAGAAGACCCCTCTTGCATTCCCCTCCTCCCCATAGGATTTTCCATCATCCCAGTCGTCGGGTTGACCGCCGACGGACATCCGTTGCCACCGCCTGATGTCGATGGTTCTACAGCTGCAGTCGTCAACTCCGGCTGCCTCCTCACCGTCGGCCTCCAAGTTCTAGCCAGCACCATCCCCTCGGCAAAGCTCAACCTTTCTAGCGTAACCGCAATCAACAACCACCTCTGCAACACGGTGCACCAAATCAACGCTGCTCTCGACAGCTCGACTCGTCTCGACAATAGCAATACTATCGTCGAGGTGAAAAATGTACCACCACTGTCGCCGCCTCCTCCACCGCCACCCAAGCAATAA 2448 51.02 MYGDCQVMSSNMGGNMVSSESIFSSPIQNPNFNFMSNFQHFPSIVPKEENGLMMRSGKDDMESGSGSEQIVEENVAGIEMESNDHNIILQQNQKKKRYHRHTARQIQEMETLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENETLKNENYRLQSALRNIICPSCGGQSILGEPSLDEQQLRLENARLREQLEQVCSLTSRYTGRPIQGMPSTAPLMAPSLDLDMNIYSRQYTEAMVSSGDMIMPLPSMLPPEAAHFPEGGLLIEEEKTLAMDLAVSSMAELVKMCRSTEPLWLRDTESGKEVLNVEEHARMFPWPLNLKQHLTDEFTTEATRHSAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQVISSSVSGHASGSLQLMYAELQSLSPLIPTREAHFLRCCQQNAEEGSWAVVDFPIDSFHDGLQHSFPRYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNLVQSGMAFGANRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSLNISTSGGQSWTALSDSPDDTVRITTRKIVEPGQPNGVILSAVSTTWLPYPPYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYSTIDVDSIQLAMSGEDPSCIPLLPIGFSIIPVVGLTADGHPLPPPDVDGSTAAVVNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINAALDSSTRLDNSNTIVEVKNVPPLSPPPPPPPKQ 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24307682 24314653 + MC06g1689 Mch6g2205 691652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2205 815 SUPERFAMILY Bet v1-like 559 781 - -
Mch6g2205 815 CDD homeodomain 95 153 IPR001356 GO:0003677(InterPro)
Mch6g2205 815 Coils Coil 151 171 - -
Mch6g2205 815 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677(InterPro)
Mch6g2205 815 ProSiteProfiles START domain profile. 286 525 IPR002913 GO:0008289(InterPro)
Mch6g2205 815 FunFam Homeobox-leucine zipper protein HDG1 81 168 - -
Mch6g2205 815 Gene3D - 82 163 - -
Mch6g2205 815 Pfam START domain 297 522 IPR002913 GO:0008289(InterPro)
Mch6g2205 815 Gene3D - 340 522 IPR023393 -
Mch6g2205 815 SMART START_1 295 522 IPR002913 GO:0008289(InterPro)
Mch6g2205 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 785 IPR042160 -
Mch6g2205 815 Pfam Homeodomain 95 150 IPR001356 GO:0003677(InterPro)
Mch6g2205 815 SMART HOX_1 93 156 IPR001356 GO:0003677(InterPro)
Mch6g2205 815 SUPERFAMILY Bet v1-like 288 524 - -
Mch6g2205 815 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch6g2205 815 Coils Coil 200 220 - -
Mch6g2205 815 SUPERFAMILY Homeodomain-like 82 153 IPR009057 -
Mch6g2205 815 CDD START_ArGLABRA2_like 290 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0361 Mch-Chr5:2472769 Mch6g2205 Mch-Chr6:24307682 5.35E-165 dispersed
Mch6g2205 Mch-Chr6:24307682 Mch7g0709 Mch-Chr7:11725418 7.24E-204 dispersed
Mch6g2205 Mch-Chr6:24307682 Mch4g0233 Mch-Chr4:1496817 8.82E-210 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43625 PF01852 START 3.10E-43 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2205 - - - 0.0