Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2213 ATGGGTGGCAGTGAGACGAATAAATCAGTGAAGGAGGAATCCAAGACAACGCCTGCCACTATACAGGAGCAGTCTTCAAACACAAGCACTGGCACCGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACAAGCCCCCAAGCACACCCATATATGTGGGGGGTACAGCATATTATGCCCCCTTATGGAACCCCTCCACATCCATATGTTGCAATGTATCCCCACGGTGGCATATATGCTCATCCGCCCATGCCTCCGGGATCATATCCTTACAGCCCTTTTGCTATAGCTTCTCCGAATGGCATTGCTGAGGCTTCTGGGAATACACCAGGCAACATGGAAGGGGAGGGTAAGCCTTCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCCGGAACATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGTACAAGTGAAAGAAGTGATGCTGATTCTCAAAGTGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGCGAATCCTAATGGTTTGATCCATGGTTCTCAGAATGAAGGACATAGTCTCGCTCATCCATTGGTGAATCAAACAATGTCCATATTACCAGTTCAAGCTTCTGCTGCTGTTACAGGTCCTGCTACGAATTTGAATATAGGAATGGACTATTGGGGTGCGCCAACAACTTCTGTCGTCCCTTCGATGTGCGGGAAGGTCCCTTCGGGTCCGATTACTGGAGGTGTTGCTGCTGGATCACGGGACAGTGTTCAGTCCCAGCTTTGGTTACAGGATGAAAGAGAGCTGAAAAGACAGAGAAGGAAGCAGTCAAATAGAGAATCTGCACGGAGATCTCGGTTGCGTAAACAGGCTGAATGTGACGAGCTGTCTCAGCGTGCGGAAGCTTTAAAGGAAGAAAATGCGAGTCTTAGATCCGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCCTCTCTCAAGAGGAGGCTTGGAGAAAGCGATGGAAATGAAGATACAAGATCTGCCAAAAATGGCCAAAATTCGATTAAAGAAGATCAGTATACAGCCCGGGCTGAACCCACGAAGGGGTGA 1206 46.35 MGGSETNKSVKEESKTTPATIQEQSSNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPGNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSERSDADSQSDSQLKSGSGKDSLEGGANPNGLIHGSQNEGHSLAHPLVNQTMSILPVQASAAVTGPATNLNIGMDYWGAPTTSVVPSMCGKVPSGPITGGVAAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDTRSAKNGQNSIKEDQYTARAEPTKG 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24410228 24417413 - MC06g1696 Mch6g2213 691660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2213 401 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2213 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2213 401 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2213 401 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2213 401 MobiDBLite consensus disorder prediction 1 39 - -
Mch6g2213 401 PANTHER G-BOX-BINDING FACTOR 3-RELATED 22 382 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Mch6g2213 401 MobiDBLite consensus disorder prediction 1 41 - -
Mch6g2213 401 MobiDBLite consensus disorder prediction 145 176 - -
Mch6g2213 401 Pfam Disordered region downstream of MFMR 134 267 - -
Mch6g2213 401 Gene3D - 302 356 - -
Mch6g2213 401 MobiDBLite consensus disorder prediction 301 321 - -
Mch6g2213 401 MobiDBLite consensus disorder prediction 358 401 - -
Mch6g2213 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2213 401 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Mch6g2213 401 MobiDBLite consensus disorder prediction 113 222 - -
Mch6g2213 401 SMART brlzneu 299 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2213 401 MobiDBLite consensus disorder prediction 378 392 - -
Mch6g2213 401 Coils Coil 312 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1486 Mch-Chr1:16380469 Mch6g2213 Mch-Chr6:24410228 4.69E-34 dispersed
Mch5g0446 Mch-Chr5:3012937 Mch6g2213 Mch-Chr6:24410228 4.55E-32 transposed
Mch10g1695 Mch-Chr10:17017979 Mch6g2213 Mch-Chr6:24410228 4.52E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43628 PF16596 MFMR_assoc 1.20E-46 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2213 K09060 - csv:101214217 723.005