Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2223 ATGACAATAGCATCAGCTTCCCTAAACAATCACTTAAATTGTGATACTTCAGAAAATCAGACTGCGGGGATGCAAAAAATTCCTCACTCTGAGTATCCTGACTGGTATTCACCAGACTCAGGAATCTGCCGTAGCCATTATCCCTCCATAGATTTGCCCTCCGACCCATTTCTTGATGTCGTCTCTTTCATCTTCTCATTCCAACATAATGGGGTTTCAGCTTTAATTGATTCCTCAACTGGACATTCAATATCTTACAGAGAATTGTATCCTCTTGTCAAGTCCATGGCTTGTGGGCTCGACAAGTTGGGTATTTCACAAGGAGACGTGGTTCTGATTCTGCTACCAAATTCCATTTTGTATCCCATTATCCTTCTGGGTGTTCTGTATTTGGGAGCAGTTGTTACGACCATGTTTCCTCAGAGCAGTTTCTCAGAAATCAAGAAACGAAGCAGTGATTGCAATGTGCGTCTGGCTTTTGCAATACCTCAGAAGGTTGAGGATTTTGAAGCGTTGGGAATTCATGCCATTGGGGTACCAGAAAATGTGAATTTAAATTCCAGGTCTATAGGATTTTCTTCCTTTTATGAGCTTATTTCAGGTGGTTTTGATTTCAATAAAAAGCCAGAGATTAAACAGCAAGATACAGCTGCTATACTATATTCATCAGGGACTACCGGAGTGAGCAAAGGGGTGATACTGACACACAGAAATCTTATAGCTACGATCGAGCTTTTTGTGCGGTTTGAAGCTTCACAGTATGAATATTTGAGTACAGAGAATGTGTATTTAGCTGTTGTACCAATGTTTCATATATATGGTCTCGCACTTTATGTGATGGGATTACTGTCACTGGGGTCTTCTATTGTTGTAATGAGCAAATTTGATATCAAAGAGGCAGTCAAGGCCATTGATAAATATAATGTTACCCATTTTCCAGTTGTTCCACCAATATTGACAGCTCTAACTAGGACTGCAAAGGAAATTTGTGGACGAAGATTTCAGAGTTTGAAACAAGTTTCTTGTGGGGCTGCTTCTTCGAGCAAGAAGGCCATAGAGGAATTTGTGCAGGCTCTCCCTCATGTCGACTTCATTCAGGGATATGGCATGACTGAGTCCGCAGCTGTAGCAACTCGTGGCTTTAATACCAAAAAGGCTCAAAATTATTCCTCAGTGGGACTTTTGGCACCAAACATGGAAGCTAAAGTAGTTGATTGCATTAATGGATCTTTCTTGCCTCCTGGTAGACACGGCCAACTTTTGCTGCGGGGACCTAGTTTGATGAAAGGGTACTTGAATAATACAGAGGCAACGATGTCCACAATAGACCATGAAGCTTGGCTACATACTGGAGACGTCGTTTACTTTGACCAAGATGGATACTTGTATGTTATTGATCGCTTAAAGGAGATTATAAAATATAAAGGCTTTCAGATTCCTCCCGCTGATTTAGAAGCTGTGTTGATTGCACATCCAGAAGTTCTTGAAGTTGCAGTGACAGCGGAAGTTGATGAAGAATGTGGGGAGATTCCAGTGGCATTTATCGTCAAGAGGCCCGGAAGCAGGCTCTCACAGAAAGATGTTATAGATTTTGTTGCTCAACAGGTTGCACCATATAAGAAGATCAGAAAAGTGGTTTTTACAGAAGCGCTACCGAAGTCTGCTGCTGGGAAAGTACTTCGGAGGGAACTGAGGAAGCAACTACCCTCCAAACTTTGA 1719 41.77 MTIASASLNNHLNCDTSENQTAGMQKIPHSEYPDWYSPDSGICRSHYPSIDLPSDPFLDVVSFIFSFQHNGVSALIDSSTGHSISYRELYPLVKSMACGLDKLGISQGDVVLILLPNSILYPIILLGVLYLGAVVTTMFPQSSFSEIKKRSSDCNVRLAFAIPQKVEDFEALGIHAIGVPENVNLNSRSIGFSSFYELISGGFDFNKKPEIKQQDTAAILYSSGTTGVSKGVILTHRNLIATIELFVRFEASQYEYLSTENVYLAVVPMFHIYGLALYVMGLLSLGSSIVVMSKFDIKEAVKAIDKYNVTHFPVVPPILTALTRTAKEICGRRFQSLKQVSCGAASSSKKAIEEFVQALPHVDFIQGYGMTESAAVATRGFNTKKAQNYSSVGLLAPNMEAKVVDCINGSFLPPGRHGQLLLRGPSLMKGYLNNTEATMSTIDHEAWLHTGDVVYFDQDGYLYVIDRLKEIIKYKGFQIPPADLEAVLIAHPEVLEVAVTAEVDEECGEIPVAFIVKRPGSRLSQKDVIDFVAQQVAPYKKIRKVVFTEALPKSAAGKVLRRELRKQLPSKL 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24473999 24480761 - MC06g1706 Mch6g2223 691670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2223 572 Pfam AMP-binding enzyme 71 432 IPR000873 -
Mch6g2223 572 ProSitePatterns Putative AMP-binding domain signature. 219 230 IPR020845 -
Mch6g2223 572 FunFam 4-coumarate--CoA ligase 2 470 571 - -
Mch6g2223 572 Gene3D - 41 469 IPR042099 -
Mch6g2223 572 FunFam Long-chain-fatty-acid--CoA ligase FadD 44 469 - -
Mch6g2223 572 Pfam AMP-binding enzyme C-terminal domain 484 558 IPR025110 -
Mch6g2223 572 CDD 4CL 52 564 - -
Mch6g2223 572 Gene3D - 470 570 IPR045851 -
Mch6g2223 572 SUPERFAMILY Acetyl-CoA synthetase-like 73 568 - -
Mch6g2223 572 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 36 565 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0963 Mch-Chr5:7246886 Mch6g2223 Mch-Chr6:24473999 2.08E-38 dispersed
Mch6g2223 Mch-Chr6:24473999 Mch9g1823 Mch-Chr9:20021828 2.98E-134 dispersed
Mch6g2223 Mch-Chr6:24473999 Mch8g1049 Mch-Chr8:7367318 5.47E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2223 K01904 - csv:101219578 855.899