Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2290 ATGGCGGTTTCTCAGACGCGGTTTTCTGCCGCTTCTTCTTCATTGCTCTTGCTTCTTCTCAACATCGTCTTCATACGATTCAGGTTTGTCGGAGCTGACGGATCGCAGAGCTTCAATTCTTCATCAATGGCGGACCGGTACATTAAGAATCAGCACGCCGTTGATAATCCAGAGGAAATTGCATCTATGGTTGATTTGAGCATTCGAAACAGCACAGAGAGGAGGAATTTGGGATTCTTCTCTTGTGGAACAGGGAACCCAATTGATGATTGTTGGCGCTGCGACCCCCGTTGGCAGCTGCGCCGTAAGCACCTTGCAGACTGCGGCATTGGGTTCGGGAGAAACGCAGTCGGCGGCCGCGATGGGCGATACTACGTCGTTTCGGATCCCGGCGACGACGACCCTGTCAACCCCAGACCCGGCACCCTCCGCCACGCTGTGATTCAGGACAGGCCTCTGTGGATTGTGTTCAAGAGGGACATGGTGATCACTCTGAAGCAAGAACTGATCATGAACAGCTTCAAGACAATCGATGCCCGTGGCGCCAATGTCCACATTGCTTATGGGGCTTGCATTACCATCCAGTTCATCACCAATGTCATCATTCACGGTCTTCATATTCACGACTGCAAGCCCACGGGGAACGCCATGGTGCGGAGCTCCCCGAGCCATTATGGGTGGAGGACAATGGCCGACGGTGATGGAATTTCCATTTTTGGATCCAGCCACATTTGGATCGACCATAATTCTCTCTCTACCTGCGCTGATGGGCTCATTGATGCTGTGATGGGATCCACTGCCATTACAATTTCAAACAACTACTTCACCCACCACAATGAGGTGATGCTGCTGGGTCACAGTGACTCTTATGTTAGAGACAAGCAAATGCAGGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTTATTCAGAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATTGGTGGAAGTGCTGATCCAACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGTCAACCCTTTTGCCAAAGAGGTCACGAAGCGGGTCGACACATCTAACGGCGTGTGGAAGCAGTGGAATTGGAGATCAGAGGGAGATCTTATGCTAAATGGAGCCTATTTCACCCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCCAGAGCCTCAAGCTTAGGAGCCAAATCCTCTTCTTTGGTCGCCTCCATTACTTCTGGCGCAGGTGCCCTTTCTTGTCGCAGGGGATACCGCTGTTAA 1305 50.65 MAVSQTRFSAASSSLLLLLLNIVFIRFRFVGADGSQSFNSSSMADRYIKNQHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSTCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVDTSNGVWKQWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVASITSGAGALSCRRGYRC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24906742 24911220 + MC06g1763 Mch6g2290 691737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2290 434 Pfam Pectate lyase 180 349 IPR002022 -
Mch6g2290 434 SMART amb_all 160 357 IPR002022 -
Mch6g2290 434 SUPERFAMILY Pectin lyase-like 63 429 IPR011050 -
Mch6g2290 434 FunFam Pectate lyase 85 427 - -
Mch6g2290 434 Gene3D - 85 427 IPR012334 -
Mch6g2290 434 PANTHER PECTATE LYASE 18-RELATED 25 431 IPR045032 GO:0030570(InterPro)
Mch6g2290 434 PRINTS Pollen allergen Amb family signature 168 184 IPR018082 -
Mch6g2290 434 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Mch6g2290 434 PRINTS Pollen allergen Amb family signature 405 428 IPR018082 -
Mch6g2290 434 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Mch6g2290 434 PRINTS Pollen allergen Amb family signature 232 253 IPR018082 -
Mch6g2290 434 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Mch6g2290 434 PRINTS Pollen allergen Amb family signature 132 157 IPR018082 -
Mch6g2290 434 PRINTS Pollen allergen Amb family signature 334 353 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1773 Mch-Chr3:18972968 Mch6g2290 Mch-Chr6:24906742 3.05E-97 dispersed
Mch4g2019 Mch-Chr4:22498721 Mch6g2290 Mch-Chr6:24906742 7.52E-180 dispersed
Mch6g2290 Mch-Chr6:24906742 Mch8g0067 Mch-Chr8:378620 6.13E-206 dispersed
Mch5g0169 Mch-Chr5:1075846 Mch6g2290 Mch-Chr6:24906742 3.55E-257 wgd
Mch6g2290 Mch-Chr6:24906742 Mch7g0880 Mch-Chr7:13370018 2.06E-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2290 K01728 - csv:101207204 805.438