Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2311 TGCTCCGCCGACGAGCTCCGGCTCCTCCTCGGCGACTCCGCCAACGCCACCGCCGTGGCCGACTACATCTGCGGGCGCTTCGACGCCGTGTCCTACGCCGTGGACAACACTTATCTTCTGTTCTCCGCGTATCTGGTGTTCGCAATGCAGCTGGGGTTTGCGATGCTGTGCGCGGGCTCCGTGCGGGCCAAGAACACCATGAACATTATGCTTACCAATGTGCTCGACGCTGCCACCGGCGGCATTTTCTACTACGTCTTTGGATTCGCGTTGGCGTTTGGAACCCCTTCTAATGGCTTCATTGGCCACCATTACTTTGGCCTCGCTCAGTTCCCTTCTTCCTCCTACGATTATGGCTTCTTCATCTTCCAATGGGCTTTTGCCATTGCCGCCGCCGGTATCACCAGTGGCTCCATTGCTGAACGCACCCAATTTGTTGCCTATTTGATCTATTCCTCTGTTTTGACTGGTTTGATCTACCCCATCGTGTCTCATTGGTTTTGGTCCGCCGACGGGTGGGGGAGCCCGGCCCGAACCGAAAATCTGCTATTTGGATCCGGAGTGATCGATTTCGCCGGCTCCGGCGTGGTTCACATGGTCGGCGGCATCGCCGGGCTGTGGGGCGCAGTAATAGAAGGGCCTCGAATCGGGCGGTTCGATCACGCCGGCCGATCAGTTGCCCTCCGAGGACACAGCGGCACATTGGTGGTTTTAGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGCTCATTCCTCAACATTTTGAAGGCCTACGGCAACACCGCCGACTCATTCTACGGCCAGTGGAGCGCCGTCGGCCGGACCGCCGTCACCACCACCCTCGCCGGCTGCACGGCGGCGCTGACGACGCTCTTCGGAAAACGGTTGCTCGTCGGCCACTGGAACGTCACCGACGTGTGCAACGGGTTGTTGGGCGGGTTCGCCGCCATCACCTCCGGCTGCGCGGTGGTGGATCCGTGGGCGGCGATCGTGTGTGGATTTTTCGCGGCGTGGGTTTTGATCGGATTCAACAAACTGGCGGAGAAATTGAGGTACGACGATCCGTTGGAGGCGGCGCAATTGCACGGCGGGTGCGGCGCGTGGGGGATTTTGTTCACGGCGTTGTTCGCGAAGCAGGCGTATGTGAACGAGATATATCCCGGATTGCCGGAGAGGCCGTATGGGCTGCTGATGGGCGGCGGCGGGAGGCTGCTGGCGGCCCACGTGGTGCAGATTCTGGCGATTGGTGGTTGGGTGAGCGTGACGATGGGGCTCGTGTTTTGGCTGCTGCACAAGTTTCAGCTGCTGAGGATAACGCCGGAGGAGGAGATGGCCGGAATGGACTTGACCAGCCACGGCGGCTTGGCTTATGTGTACAATGACGAGGACAAG 1404 60.11 CSADELRLLLGDSANATAVADYICGRFDAVSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNGFIGHHYFGLAQFPSSSYDYGFFIFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLIYPIVSHWFWSADGWGSPARTENLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGNTADSFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFAAWVLIGFNKLAEKLRYDDPLEAAQLHGGCGAWGILFTALFAKQAYVNEIYPGLPERPYGLLMGGGGRLLAAHVVQILAIGGWVSVTMGLVFWLLHKFQLLRITPEEEMAGMDLTSHGGLAYVYNDEDK 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25075392 25076959 - MC06g1779 Mch6g2311 691758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2311 468 PANTHER AMMONIUM TRANSPORTER 26 462 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Mch6g2311 468 Pfam Ammonium Transporter Family 38 461 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch6g2311 468 NCBIfam ammonium transporter 35 461 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch6g2311 468 Gene3D Ammonium transporter AmtB like domains 12 468 IPR029020 -
Mch6g2311 468 SUPERFAMILY Ammonium transporter 32 442 - -
Mch6g2311 468 ProSitePatterns Ammonium transporters signature. 190 215 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch6g2311 468 FunFam Ammonium transporter 16 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2311 Mch-Chr6:25075392 Mch8g2525 Mch-Chr8:28233111 1.09E-250 dispersed
Mch5g0143 Mch-Chr5:943775 Mch6g2311 Mch-Chr6:25075392 1.23E-253 wgd
Mch6g2311 Mch-Chr6:25075392 Mch7g0891 Mch-Chr7:13469856 6.37E-263 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2311 K03320 - csv:101223077 850.121