Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2320 ATGAGCTATCATGGAGGAGATTCGTTCGCGCAGTCTTGTGTTTCAGCACAAGGTTGTGGAAGAGATGATCTGTATATGGAGCTATGGAGGGCTTGTGCTGGTCCACTGGTTGATGTACCTCGCGTAGATGAGAGAGTCTTCTATTTCCCTCAAGGGCATATGGAACAATTAGAGGCGTCAACAAATCTGGAGCTAAATAAGAGAATTCCTGTATTCAATCTTTCCTCAAAGATTCTCTGTCGCGTAATTCATATTGAGTCGCTGGCAGACCGTGAAACGGATGAGGTTTATGCACAAATAACGTTAATGCCTGAATCAAATCAAAGTGAGCCTAATAGTCTAGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCATTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCCGTTCTCCGAAAACATGCCACTGAGTGCCTACCTCCGTTGGACATGACTCAGGCTACCCCGACTCAGGATCTGATAGCCAAGGATCTTCATGGTTTTGAATGGCGATTCAAGCATATTTTCAGAGGTCAGCCACGAAGGCACCTGCTAACAACTGGTTGGAGTACATTTGTCACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAACGGAGAGCTTCGAGTTGGGGTGAGGCGTCGTGCTCGGCAGCTAACTAGCATGCCATCATCTGTGATATCGAGTCAAAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCAAGGACTTGTCAGTTCATCATAAGTCTGAATAAATACTTGGAAGCAGTCAATAATAAATTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCGGAGAGAAGGTTTTCGGGAACTATAATTGGTGCTGAAGATATTTCACCTCATTGGCATAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGACGAACAAACAACTATTCCAAGACCTGACAGGGTGTCGCCTTGGGATATAGAACCACTCACGTCTTCAGCAGCCACAAATCTAACTCAACCAGTTGCGAAAAACAAAAGGCCTCGACAACCAACTGAAACTGCTCTTGATGGTGCTGATTTTACTAAACCAGCACTTTGGGATTCTGGATTGGCACAGCCTCATGATGGTAAACAGTGCAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGTCAACATAGAGAGACGGATACTATCAGCATCAGCACATGTGTATCAAGAACACAGACCGATGGGGCCTGGCTATCTTCTACCCAATCCAATAGTCATAAACACCCAGTAAATGACATGGCGCTAGATTATAAAACTGTCTCTGGTTGCGGTTGGTCTTTTCTATCAGGACCTACACCACCTTCAAACTCTTTGGTGAAGTTAAGCGATGATCAAATACTTGATCCCACTGAAAATGGGAGGAAAGGTGAGACAGTGGCCAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTAGACTTCCTGCGGAGAAGGCATCTTCTCAACTAAGCAGTGTGTCTAGTGAGACAGAAGGACGCATCAGTACGTTGTCAGTGGCTCATTCTGATAAAAAATCTGACATTTTGGAGGTCTCCATAGAAAGAACATCAGAACCATTACAAGCATCTCTGAAGGAGTCTCAAAGCAATCAGAGTAGCTCAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTTAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGATGATGAAGGGGATATAATGCTTGTTGGAGATGACCCATGGGAAGAATTTTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAAGAAGCAAGCAGCTGCCTTCAGAAGTTGAAGAGGCTTAA 2067 43.88 MSYHGGDSFAQSCVSAQGCGRDDLYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPVFNLSSKILCRVIHIESLADRETDEVYAQITLMPESNQSEPNSLDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQDLIAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQLTSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGAEDISPHWHNSSWRSLRVQWDEQTTIPRPDRVSPWDIEPLTSSAATNLTQPVAKNKRPRQPTETALDGADFTKPALWDSGLAQPHDGKQCSNAAESRKGENNELCQHRETDTISISTCVSRTQTDGAWLSSTQSNSHKHPVNDMALDYKTVSGCGWSFLSGPTPPSNSLVKLSDDQILDPTENGRKGETVASCRLFGIDLNHLARLPAEKASSQLSSVSSETEGRISTLSVAHSDKKSDILEVSIERTSEPLQASLKESQSNQSSSTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDIMLVGDDPWEEFCNMVRRIFICSREQVKKMSSRSKQLPSEVEEA 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25135217 25143827 - MC06g_new0534 Mch6g2320 691767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2320 688 Gene3D - 126 231 IPR015300 -
Mch6g2320 688 Pfam AUX/IAA family 633 667 IPR033389 -
Mch6g2320 688 Pfam AUX/IAA family 574 623 IPR033389 -
Mch6g2320 688 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Mch6g2320 688 FunFam Auxin response factor 290 361 - -
Mch6g2320 688 MobiDBLite consensus disorder prediction 359 374 - -
Mch6g2320 688 FunFam Auxin response factor 582 675 - -
Mch6g2320 688 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Mch6g2320 688 Gene3D - 290 363 - -
Mch6g2320 688 ProSiteProfiles PB1 domain profile. 587 668 IPR053793 -
Mch6g2320 688 MobiDBLite consensus disorder prediction 527 546 - -
Mch6g2320 688 FunFam Auxin response factor 127 231 - -
Mch6g2320 688 MobiDBLite consensus disorder prediction 527 548 - -
Mch6g2320 688 Gene3D - 582 675 - -
Mch6g2320 688 MobiDBLite consensus disorder prediction 359 412 - -
Mch6g2320 688 MobiDBLite consensus disorder prediction 569 591 - -
Mch6g2320 688 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Mch6g2320 688 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch6g2320 688 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677(InterPro)
Mch6g2320 688 SUPERFAMILY CAD & PB1 domains 578 663 - -
Mch6g2320 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 677 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch6g2320 688 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0906 Mch-Chr10:6405045 Mch6g2320 Mch-Chr6:25135217 5.32E-286 dispersed
Mch6g0012 Mch-Chr6:110952 Mch6g2320 Mch-Chr6:25135217 1.31E-155 dispersed
Mch6g2320 Mch-Chr6:25135217 Mch8g2596 Mch-Chr8:29101355 4.18E-103 dispersed
Mch6g2320 Mch-Chr6:25135217 Mch1g2064 Mch-Chr1:20009579 6.94E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43634 PF02362 B3 1.50E-21 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2320 K14486 - csv:101209208 1177.54