Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2340 ATGGATTTGATGTCTGGGAATTCTGAGCCTGAAGATCGTGAGGTTGCGGAGAAAGATCCGACGGGACGGTACATACGGTACGATGAAATTTTGGGTAAAGGAGCATTCAAGACAGTATACAAAGCATTCGACGAAGTCGGTGGAATAGAAGTTGCATGGAGCCAAGTGGACATTGAAGATGTTTTGCAGTCACCGGAACAACTCCAACGATTATATTCTGAGGTTCATCTCCTAAAGTCACTGAAACATGAAAATATCATCAAGTTCCATAGCTACTGGGTTGATGATGAGAACAAGACTATCAACATGATAACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCACCGTAAAGTTGACATGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGGGGTTTAACCTATTTGCATGGTCACAATCCTCCAATTATTCACAGGGATTTGAAATGCGATAATATATTTGTTAACGGAAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCAATTGTCATGCAGCAGTCTACTGCTCGAAGTGTTATTGGCACTCCAGAGTTCATGGCCCCAGAGCTTTATGATGAGGACTATAATGAACTTGTCGACATATATTCTTTTGGCATGTGCATGTTGGAAATAGTTACGTGTGAATACCCATATAATGAATGTAAAAATGCTGCTCAAATATTCAAGAAGGTTACTTCTGGTACAAAGCCTGCTTCCCTTGAAAAAGTGTTGGATCCTCAAGTTAAGCAGTTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGACTACCTGCAAGTGAACTCTTGAAAGATCCATTCCTTGTGATTGAAAATACTAAGGAGCATAGTTCCGAACCTTCAAGGTTATTGAATGCGCAGTTCATATCGGTAAATCCTCCACTGCTTGGTTCCAATCCAGTGGACATAGCTCATAGCTGCATGAAACTCTCAGGCTCAGAGAGCTCATCTGCCAAAAGCATTTCCCACTTTTCAAGTTTGGAACTTCAGAGATTCACTGAGAATAATGAATTGATGTTGAAAGGGGAAATGACGGATCATAATACAATTTCATTCCATTTGCGCATTGCTGAACAATGTGGTAAATCGAAGAATATCCATTTTGCCTTTTACCTTGATTCTGATACTGCCTTGGCAATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCGACTACCATAGCCAAACTAATAGATGAGTTAATTACCAAGTTTGTTCCCAGCTGGAAACCGTGTGCAAATATTTGCTCTGAAACTCAAGAGGATAAGACCTTCATTCCTCCTTTCTTCCCTGAGCTTGTACTGTCATCTCCCATGGTGGCTGACGCTAGGAAATCTCTGACACATTTGGCCGACATGGAAGATCAAGACAACCAGCAGTCGATTATCTCGTGCGCATCACTGGATTACATCCATTCGACAACCTCAGGTTACAGCACTGGAAAAGGATCAGAATACGGCGACTTCGGCCACCCTGAAGGCGAAAAAGTGTTTATCAGCGAACCAATTGATTCTGACACCGCAGTTTCCGTCTCGACTGTGATAGATTTTGCGAAACCGTCTCTAATCTCCTCCTGCTCAGGAATGTCTAAAGATTTGAGTTTGTCGAGCTTTTCCTCGTTTTCTGTGGAAGAAAGAGATCACCATGATGAACTGAAGCTGGAGATTGATGCTATTGACTTGCAGTACCACCAGTGCCTTTGTGAACTCTCAAGAATGAGAGAGGAAGCAATAGAAAGTGTCAAGAAGAGGTGGATGGCAAAGAAGAAAGCTTGTGCTATTTGA 1839 42.14 MDLMSGNSEPEDREVAEKDPTGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFHSYWVDDENKTINMITELFTSGSLRQYRKKHRKVDMKAFKNWARQILRGLTYLHGHNPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQSTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNAAQIFKKVTSGTKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLVIENTKEHSSEPSRLLNAQFISVNPPLLGSNPVDIAHSCMKLSGSESSSAKSISHFSSLELQRFTENNELMLKGEMTDHNTISFHLRIAEQCGKSKNIHFAFYLDSDTALAIALEMVEQLELSNEDATTIAKLIDELITKFVPSWKPCANICSETQEDKTFIPPFFPELVLSSPMVADARKSLTHLADMEDQDNQQSIISCASLDYIHSTTSGYSTGKGSEYGDFGHPEGEKVFISEPIDSDTAVSVSTVIDFAKPSLISSCSGMSKDLSLSSFSSFSVEERDHHDELKLEIDAIDLQYHQCLCELSRMREEAIESVKKRWMAKKKACAI 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25294586 25298420 + MC06g1803 Mch6g2340 691787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2340 612 SUPERFAMILY Protein kinase-like (PK-like) 19 282 IPR011009 -
Mch6g2340 612 FunFam probable serine/threonine-protein kinase WNK9 108 287 - -
Mch6g2340 612 Gene3D Phosphorylase Kinase; domain 1 9 106 - -
Mch6g2340 612 Gene3D - 362 445 - -
Mch6g2340 612 CDD STKc_WNK 23 282 - -
Mch6g2340 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g2340 612 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g2340 612 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g2340 612 FunFam Probable serine/threonine-protein kinase WNK1 10 106 - -
Mch6g2340 612 SMART serkin_6 25 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g2340 612 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 478 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Mch6g2340 612 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 365 420 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Mch6g2340 612 Gene3D Transferase(Phosphotransferase) domain 1 108 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0500 Mch-Chr5:3335719 Mch6g2340 Mch-Chr6:25294586 8.65E-205 dispersed
Mch6g2340 Mch-Chr6:25294586 Mch8g2922 Mch-Chr8:31967533 5.71E-148 dispersed
Mch6g2340 Mch-Chr6:25294586 Mch7g1064 Mch-Chr7:14680084 3.64E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77516 PF00069 Pkinase 2.10E-51 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2340 K08867 - csv:101207748 984.556