Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2382 GAATCCGCCGCCGTGAGGGGCGTGGATTTTGACGGCGGGGGCGGCGGAGGAGGAGAGAGGGAGCACATGTTCGACAAAGTGGTGACGCCGAGCGATGTGGGAAAATTGAACCGTTTGGTGATTCCAAAGCAACACGCGGAGAGATTTTTCCCGTTGGATTCCTCCACCAACGACAAGGGCTTGCTCTTGAACTTCGAGGACCGTAACGGAAAATCCTGGCGCTTCCGTTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAGGGCTGGAGCCGCTTCGTCAAAGAGAAGCGCCTCGACGCTGGAGATATCGTCTCTTTTCAACGCGGCGTCGGCGAAATCGGCAGAGATCGCCTTTACATTGACTGGTGCCGCCGCCCTGAGCTCCCCATGGACCACCCCCACCACCACCATCACCCCGCAGCGGTTCTCCGACCCAGCGTCGTCGTCCCCGCCGCTTGGGGTTCGCTAGTGTGGCCACCATTTGCTGCGGCAGCAGCTGGTTATCCAGCTGCCACCGCAGCGCGGGACCACCAAATAAACAGAAGCAACAACAGTAACAACAGTAACAACAGCAAAAAAATATTCGATTGGAGAAATGAAGGGTGCTGTTCATACGGATCCGGGGTTGTGTATTTGAGATCATCGGACGGGAGAGGAGCTGCTGCTGTTGCAGAGGGGAATAATCAGGTGCAGCAGGAGCAGGATTACGGGAGCGGTGGTGGTGGCGGCGGAGGAGCCGCCGTCGGAGGAGGAAATCACGAGGCATTATTACAATCCAGTAGTGAAGAAACAGTACCAGTGATGAAGAGATCAAGATTGAGGCTATTTGGTGTAAACATGGAGTACTGTTCAATTTCTTCATCTGATGAATCTGACTTATTATTCTCTACTACTACTTCTAATCAAAATCCCACCACCACCACC 933 54.23 ESAAVRGVDFDGGGGGGGEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWCRRPELPMDHPHHHHHPAAVLRPSVVVPAAWGSLVWPPFAAAAAGYPAATAARDHQINRSNNSNNSNNSKKIFDWRNEGCCSYGSGVVYLRSSDGRGAAAVAEGNNQVQQEQDYGSGGGGGGGAAVGGGNHEALLQSSSEETVPVMKRSRLRLFGVNMEYCSISSSDESDLLFSTTTSNQNPTTTT 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25689779 25690711 - MC06g1838 Mch6g2382 691829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2382 311 CDD B3_DNA 22 111 IPR003340 GO:0003677(InterPro)
Mch6g2382 311 MobiDBLite consensus disorder prediction 1 22 - -
Mch6g2382 311 Gene3D - 18 141 IPR015300 -
Mch6g2382 311 ProSiteProfiles B3 DNA-binding domain profile. 24 129 IPR003340 GO:0003677(InterPro)
Mch6g2382 311 FunFam B3 domain-containing protein 17 139 - -
Mch6g2382 311 SMART B3_2 24 129 IPR003340 GO:0003677(InterPro)
Mch6g2382 311 SUPERFAMILY DNA-binding pseudobarrel domain 21 115 IPR015300 -
Mch6g2382 311 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 283 IPR044800 GO:0003700(InterPro)
Mch6g2382 311 MobiDBLite consensus disorder prediction 226 255 - -
Mch6g2382 311 Pfam B3 DNA binding domain 24 128 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0821 Mch-Chr10:5729867 Mch6g2382 Mch-Chr6:25689779 8.63E-65 dispersed
Mch5g1579 Mch-Chr5:16769191 Mch6g2382 Mch-Chr6:25689779 2.08E-46 dispersed
Mch6g2382 Mch-Chr6:25689779 Mch9g1988 Mch-Chr9:21216481 6.16E-46 dispersed
Mch6g2382 Mch-Chr6:25689779 Mch4g2052 Mch-Chr4:22773171 5.01E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43639 PF02362 B3 2.00E-29 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2382 K09287 - csv:101211271 306.99