Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2410 ATGGGTTTCCCTGCGAGCTATACGGAGCTTCTGCTTCCGAAGCTCTTCATCCACGTACTCTCCTTGCTCGGCCTCCTCCGGAAGCTAATTTCCGTCCTCTTCCGCCTTCTAGGGCTCCAAGATTTCCTCGAACCGGACATTCCATGGCCTAATCAGGCGGATTTCTTCCCGACGGGGCCGTCGTCAGACCTCGATCCAGTCTCCGCCGCCGTCCTGCGCGAGATTCTGCCGGTGGTGAAGTTCTCGGAGCTTTTGGAGCCGCCGGAGAGCTGCGCCGTGTGCCTGTACGAGTTCGAGGCGGACGACGAGATCCGGCGCCTGGCGAACTGCCGCCACATATTCCACCGCGGATGCCTCGATCGGTGGATCGGATACGGCCAGAGGACGTGCCCGCTCTGCCGGACGGTGTTTATTCCGGCCGATTTGCGGAGCGGTGGTTGTAGCGATAGCGACGAGAGGATTTGGGAGGAGGATTCGGAAATCTTTGAACTACTACTCCACCACGGCGATTCTTCTTCTTCTTCTTCGTCTCTTCTCACCGCTGGT 546 59.16 MGFPASYTELLLPKLFIHVLSLLGLLRKLISVLFRLLGLQDFLEPDIPWPNQADFFPTGPSSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSLLTAG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26023092 26023637 - MC06g1865 Mch6g2410 691857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2410 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 137 IPR013083 -
Mch6g2410 182 SUPERFAMILY RING/U-box 73 139 - -
Mch6g2410 182 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Mch6g2410 182 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 148 - -
Mch6g2410 182 SMART ring_2 91 133 IPR001841 -
Mch6g2410 182 SMART ringv_2 90 134 IPR011016 GO:0008270(InterPro)
Mch6g2410 182 Pfam Ring finger domain 90 134 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2410 Mch-Chr6:26023092 Mch7g0647 Mch-Chr7:11130262 4.61E-54 dispersed
Mch1g0595 Mch-Chr1:10143153 Mch6g2410 Mch-Chr6:26023092 1.75E-06 transposed
Mch5g0404 Mch-Chr5:2769373 Mch6g2410 Mch-Chr6:26023092 1.82E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2410 K16281 - csv:101215533 282.337