Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g2500 | ATGGTGAGGGGGAAAGTTGAGATGAAACGGATTGAAAATTCGACAAGTCGGCAAGTGACCTTCTCAAAGCGCCGAAATGGGCTTCTGAAGAAGGCGTACGAGCTGTCGGTTCTTTGTGATGCTCAAGTCTCCGTCCTCATCTTCTCTCAGAAAGGCAGGCTCTATGAGTTCTCCAGCTCCGATATGCAGAAGTCAATCGAACGCTATCATAAGTACGGGAAAGATGGACAGACCAATGCTTTCCGCTCCGAAGGATACATGCAGGTTTTCTTCTTCTCCTTCTTTTCTACTCGTCAACAATTGAAGCAAGAAGCTGAGATGACGGCAAAAAAAATAGAGCATCTTGAAAATTCACAACAGAAGCTTTTGGGACGTGGCTTGGATTCTTGTTCTCTCAAGGAACTTCGAGAGATCGAAAGACAGTTGGAATTGAGCTTATCCCGTATTAGAGAAAGAAAATCTCAACTATTCAAGGAGCAGAAAGAGAAACTGATTGAGAAGGGGAAGCTCCTTACAGAAGAGAATGCAAAGTTATCTGCAAAGTGTGGTGCTGAGCCATGGCAAGCAGAAGAAGGTGGTGGTGGAGGTGATGCAGAGGGAGGTATTGTGGGTTTATGCAGCCAAAGTAGCAAAAGCAATTCTGATATGCAGACCGAACTGTTCATTGGATTGCCCTGCATGTAA | 684 | 45.03 | MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAQVSVLIFSQKGRLYEFSSSDMQKSIERYHKYGKDGQTNAFRSEGYMQVFFFSFFSTRQQLKQEAEMTAKKIEHLENSQQKLLGRGLDSCSLKELREIERQLELSLSRIRERKSQLFKEQKEKLIEKGKLLTEENAKLSAKCGAEPWQAEEGGGGGDAEGGIVGLCSQSSKSNSDMQTELFIGLPCM | 227 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 26945232 | 26962779 | - | MC06g1946 | Mch6g2500 | 691947 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g2500 | 227 | Coils | Coil | 98 | 118 | - | - | |
| Mch6g2500 | 227 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 206 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Mch6g2500 | 227 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | ProSiteProfiles | K-box domain profile. | 98 | 188 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch6g2500 | 227 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | Coils | Coil | 161 | 181 | - | - | |
| Mch6g2500 | 227 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | SUPERFAMILY | SRF-like | 3 | 79 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | FunFam | MADS-box transcription factor MADS-MC | 13 | 84 | - | - | |
| Mch6g2500 | 227 | Gene3D | - | 13 | 88 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch6g2500 | 227 | Pfam | K-box region | 98 | 182 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch6g2500 | 227 | Coils | Coil | 132 | 152 | - | - | |
| Mch6g2500 | 227 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g2500 | Mch-Chr6:26945232 | Mch7g0741 | Mch-Chr7:12030179 | 2.47E-56 | dispersed | |
| Mch6g2500 | Mch-Chr6:26945232 | Mch6g2721 | Mch-Chr6:28829510 | 1.44E-58 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43651 | PF01486 | K-box | 1.20E-21 | No_clan | Mch | TF |
Pathway information