Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2505 ATGTCTACTGCCATTCTCTCTCTCCCTTTCACTCTTAAGCCCACGCGCCACCGCAATCGCAGCCCCAATTCCGCTCTCTGGCCGCCGTCTCCTCTGCTTTCTGTCTCCTCCATTCATGGATTTAAGAAGCCAGCAATAAGCTTCAGCAGTGCCAATTCCAATTCCAATGCTACTTTCGCCTATGTTACCGGGCCTGCCTCCGACCCCATTGCCACCGACCCCGACCCAAAGCTCGACGGCGCTTCGGATTCGGATTCGGATTCCCAGGTTCGGGTACTTCGCGTTTTGAATTGGGGGCTTCTATGGCGGCTTTTGAGGAAGGACAACCTCCGGATTGTGGCTTCTTTTCTCACTCTTATCAGCTGCACCACTTGTACCCTCTCCATGCCCTTCTTCTCTGGAAGATTTTTTGAGGTACTTATAGGTGCAAAATCTGGGTCTTTGTGGAGGCTGCTGAGTACGGTTGGAATTTTGTATGCATTGGAGCCAATATTGACGGTTTTATTCGTGACAAACATGAATTTCATATGGGAGAAGGTTATGGCAAGATTAAGAGCCCAAATTTTTGGAAGGTTGCTAATTCAGAAGGTGGAGTTTTTTGACAGATACAAGGTTGGTGAAATTACTGGATTGTTAACTTCTGACTTGGGCTCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTTTCTGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCATTGTCCCCCCAGCTCGCACCTATTCTTGGTCTGCTGATGCTTACTCTGTGTACAAGCGTTCAACCATTCCTGTGTTTAAAGCTCATGGATTAGCTCAAGCATCCATGGCTGATTGTGCAACAGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGTGGCGAAAAGCGTCAAATGTTCACTTTTGGTCACCAGGTTATTGCATATGAGCGTAGTGGCATATCACTTGGGACTTTTAAATCTCTGAATGAATCTTTAACTAGAGTCGCTGTTTATGTTTCTCTTATGATGTTATATTGGCTTGGAGGAGACAAAGTGAGAGCGGGCGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTTACTCTAACATTTGCTGTTCAAGGATTAGTAAATACATTTGGAGATCTCCGTCGAACTTTTGCTGCTGTTGAGAGAATTAATACTGTTTTAAAAGAAGAAGTTGATGAAGCACTTGCATATGGGTTGGAAAAAGAGATGCAGCAAAAAGAATTCCCCAATGAAAAATATAAGTTGTTATTCTCTAGTGATGATACAGGTGAAAGTAGTCGATTTGTGAAAACGCAGTACATGGCGGCCCTCAAATCTTCTAGCAATATTATCAATCTTGCTTGGTCCGGTGATATTTGTCTCGAAGATGTGAGCTTTTCTTATCCTTTGAGACCGGACATTAATGTTCTTAATGGTTTGAATTTAACCCTTAAATGCGGGACCATAACGGCTTTAGTTGGTCCTAGTGGAGCAGGAAAGAGTACAATAGTACAGCTATTGTCACGTTTTTATGAGCCAAAGCAAGGTCAGATAAAAGTTTCCAGCGAGGATATTCGAGCATTTGATAAGAGAGAATGGGCTCGAGCTGTTTCGATTGTGAATCAAGAACCCGTTCTTTTTTCGGTGTCTGTTGGGGAGAATATTGCATATGGTCTTCCAGATGATAATGTAACAAAGGATGAGGTGATAAAGGCAGCCAAAGCTGCAAACGCCCATGATTTCATTGTTACACTTCCTCAGGGCTATGACACGCCGGTCGGTGAACGTGGAGGCCTTCTAAGTGGTGGCCAGAGACAGAGAATTGCTATTGCGAGAGCCTTGCTCAAGAATGCTCCAATCCTTATACTTGATGAGGCAAGTGCGACCAGTGCACTCGATGCAGTCAGTGAGCGACTGGTTCAGGACGCTCTGAACCATCTAATGAGGGGAAGGACGACATTGGTGATCGCACATCGGTTGAGCACGGTCCAAAATGCTCACCAAATTGCATATTGTTGTGATGGGAAAATTGTTGAGCTGGGAACTCATTTCGAACTTCTGGCTCAGAAAGGTCAGTATGCTTCATTAGTTGGCACACAAAGGCTGGCATTTGAGTGA 2169 44.35 MSTAILSLPFTLKPTRHRNRSPNSALWPPSPLLSVSSIHGFKKPAISFSSANSNSNATFAYVTGPASDPIATDPDPKLDGASDSDSDSQVRVLRVLNWGLLWRLLRKDNLRIVASFLTLISCTTCTLSMPFFSGRFFEVLIGAKSGSLWRLLSTVGILYALEPILTVLFVTNMNFIWEKVMARLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEASNSSPSTSDWNNMYIICIVPPARTYSWSADAYSVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFTFGHQVIAYERSGISLGTFKSLNESLTRVAVYVSLMMLYWLGGDKVRAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRRTFAAVERINTVLKEEVDEALAYGLEKEMQQKEFPNEKYKLLFSSDDTGESSRFVKTQYMAALKSSSNIINLAWSGDICLEDVSFSYPLRPDINVLNGLNLTLKCGTITALVGPSGAGKSTIVQLLSRFYEPKQGQIKVSSEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIVTLPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEASATSALDAVSERLVQDALNHLMRGRTTLVIAHRLSTVQNAHQIAYCCDGKIVELGTHFELLAQKGQYASLVGTQRLAFE 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26993169 27001224 + MC06g1949 Mch6g2505 691952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2505 722 Pfam ABC transporter transmembrane region 113 227 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch6g2505 722 Pfam ABC transporter transmembrane region 278 386 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch6g2505 722 Pfam ABC transporter 494 644 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch6g2505 722 Gene3D ABC transporter type 1, transmembrane domain 254 432 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch6g2505 722 Gene3D ABC transporter type 1, transmembrane domain 94 229 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch6g2505 722 SUPERFAMILY ABC transporter transmembrane region 101 416 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch6g2505 722 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 92 717 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Mch6g2505 722 CDD ABC_MTABC3_MDL1_MDL2 476 717 - -
Mch6g2505 722 SMART AAA_5 503 679 IPR003593 GO:0016887(InterPro)
Mch6g2505 722 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 399 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch6g2505 722 Gene3D - 474 719 IPR027417 -
Mch6g2505 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 717 IPR027417 -
Mch6g2505 722 ProSitePatterns ABC transporters family signature. 617 631 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch6g2505 722 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 474 720 - -
Mch6g2505 722 CDD ABC_6TM_TAP_ABCB8_10_like 116 407 - -
Mch6g2505 722 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 476 716 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2505 Mch-Chr6:26993169 Mch8g1046 Mch-Chr8:7352387 1.13E-71 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2505 K05657 - csv:101211598 1069.3