Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2520 TTCATCATGGCGGAAGTGATGCTGATGAAAGAAATTGAGGACACGGCTGGTCGGCTTGGGATAGATCTTTCCCAAGTTGACCTTGATTCCATTCGTCTCCCTCCTGGCGATGATTTTGGGATCATTAGTGATGATGAAGAAGTTCTACAAGAGGAGAGCCTAGAGTTTGATTCTGGATTTGGAAACATTATAGTTGTTGACAATCTTCCAGTTGTTCCTCCGGAGAAGTTTGAGAAGCTGGAAGGTGTTGTTCGTAAAATTTTTGGTCAGATTGGAGTTATCAAGGACGATGGTTTGTGGATGCCCGTTGATCCTACCACGCAAAAAACTTTAGGTTACTGTTTTATTGAGTATAGTACTCCACAGGAGGCTGAGCTTGCCAGAGAGAAGACCGATGGGTATAAGTTGGATAGAGCCCATATTTTCACGGTTAACATGTTCGAGGACTTTGACAGATTTATGAAAGTTCCAGATGAGTGGGCTCCTCCTCAAATTAGCCCATATACTCCTGGGGAAAATCTTCAACAATGGCTTACTGATGATAAAGCACGTGATCAGTTTGTTATTCGTTCTGGATCTGACACCGAGGTCTTTTGGAATGATGCTAGACATTTAAAGCCCGAGCCTGTTTACAAGCGTCCGTTCTGGACTGAGAGTTTTGTGCAGTGGTCCCCATTGGGGACATACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCTCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAAAAGTATCTAGTGACTTACAGCAACCACGAGCCAAGTAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTGAGAACTGGCAAAGTTATGAGAGATTTCAAAGGAAGTCCCGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCTGGCGTATCTTGGCCTGTTTTTAGGTGGGGTGGCGGGAAAGACGATAAATACTTTGCCAGGATTGGGAAGAATGTGGTCTCTGTCTATGAAACAGAGACTTTCTCTCTTATTGACAAGAAATCTTTGAAGGTTGAGAATGTTATGGATTTCTGCTGGTCTCCTACCGATCCCATTATTTCTATCTTTGTTCCTGAGCTAGGTGGTGGGAATCAACCGGCTAGGGTGAGTCTTATTCAAATCCCCAGCAAGGAGGAGCTGAGACAGAAAAATCTTTTTAGCGTTAGCGATTGTCAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGACAGATATACAAAGACGAAGAAGAGCACATACACAGGGTTTGAGCTTTTCCATATAAAAGAGCGAGATATACCTATTGAAGTTCTGGAGCTTGAGAATAAGAACGACAAGATTATTGCCTTTGCCTGGGAGCCAAAGGGGCACCGCTTTGCAGTTATTCATGGCGACAACCCCAGGCCAGATGTAAGTATTTACACAATGCGCACTGCCCACAACAGTGGGCGAGTGTCGAAACTTACAACTCTCAAAGGCAAGCAGGCAAATTCTCTTTTCTGGTCACCTGCCGGACGCTTCATCATTCTTGCTGGACTGAAAGGTCTTAACGGACAGTTGGAATTTTACAACGTTGATGAGCTGGAGACAATGGCAACTGCAGAGCATTTCATGGCTACTGATATTGAGTGGGATCCTACTGGGAGGTATGTTGCAACTGCGGTTACTTCAGTTCATGAGATGGAAAACGGCTTCAACATCTGGTCCTTTAATGGAAAGCTTCTCTACAGAATACTGAAGGACCACTTCTTTCAGTTTGCATGGCGGCCAAGACCGCCAACCTTCTTGAGTCCTGAGAAAGAGGAAGAGATAGCGAAGAATCTAAAGAAGTACAGTAAGAAGTATGAGGCGGAAGATCAGGATGTGTCTATGCTTCTGAGCGAGCAGGATCGTGAGAAGCGTAGAATGTTGAAGGAGGATTGGGACAAGTGGGTCAATGAATGGAAAAGATTGCACGAAGAAGAGAAGATGTTGCGGCAGAAACTGAGGGATGGCGAAGCCAGCGATGAGGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTTGAAGAGATTTTGGATGTTACGGAGGAAGTTTTGTCCTTTGATTTTGGGCAGGAATGA 2166 44.64 FIMAEVMLMKEIEDTAGRLGIDLSQVDLDSIRLPPGDDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYSTPQEAELAREKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPQISPYTPGENLQQWLTDDKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSNHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVVSVYETETFSLIDKKSLKVENVMDFCWSPTDPIISIFVPELGGGNQPARVSLIQIPSKEELRQKNLFSVSDCQMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFHIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDVSIYTMRTAHNSGRVSKLTTLKGKQANSLFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPTFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKEDWDKWVNEWKRLHEEEKMLRQKLRDGEASDEEEEYEAKEVEVEEILDVTEEVLSFDFGQE 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27122232 27127122 + MC06g1963 Mch6g2520 691967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2520 721 SUPERFAMILY RNA-binding domain, RBD 60 144 IPR035979 GO:0003676(InterPro)
Mch6g2520 721 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 50 715 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch6g2520 721 Pfam Eukaryotic translation initiation factor eIF2A 408 608 IPR013979 -
Mch6g2520 721 Gene3D - 61 145 IPR012677 -
Mch6g2520 721 SMART rrm1_1 63 145 IPR000504 GO:0003723(InterPro)
Mch6g2520 721 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 31 710 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch6g2520 721 Pfam RNA recognition motif 84 138 IPR000504 GO:0003723(InterPro)
Mch6g2520 721 FunFam Eukaryotic translation initiation factor 3 subunit B 413 628 - -
Mch6g2520 721 Gene3D - 417 625 IPR015943 GO:0005515(InterPro)
Mch6g2520 721 Gene3D - 177 390 IPR015943 GO:0005515(InterPro)
Mch6g2520 721 FunFam Eukaryotic translation initiation factor 3 subunit B 183 384 - -
Mch6g2520 721 SUPERFAMILY DPP6 N-terminal domain-like 219 606 - -
Mch6g2520 721 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 149 IPR000504 GO:0003723(InterPro)
Mch6g2520 721 CDD RRM_eIF3B 61 145 IPR034363 -
Mch6g2520 721 PIRSF Transl_init_eIF3b 9 715 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch6g2520 721 FunFam Eukaryotic translation initiation factor 3 subunit B 57 156 - -
Mch6g2520 721 Coils Coil 689 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1530 Mch-Chr11:12510817 Mch6g2520 Mch-Chr6:27122232 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2520 K03253 - csv:101213144 1401.73