Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2535 ATGGATAATGTTTCGTCCTCCGATGCGACGTCGTGTTGCTCCCGAACCAGCGTCTCCGACGAGGAGCTTCTTCTGGCGTCGAGATGTCCTAAGAAGCGCGCCGGCCGGAAGAAGTTCAAGGAGACACGTCACCCGGTGTTCCGCGGCGTCCGGCGGCGGAACTCCGGGAAGTGGGTGTGCGAGGTCCGGGAGCCGAACAAGAAGAGCAGGATTTGGCTGGGCACATTCCCGACCGCTGAAATGGCAGCCAGAGCCCACGACGTGGCCGCCATGGCGCTGAGGGGCCGCGCCGCTTGCCTCAACTTCGCCGACTCCGCCTCCCGCCTCCCCCTCCCCCCGACCCTCCACCCCAAGGACATCCAGAAGGCCGCCGCCCAGGCCGCCGAAGCCTTCCGGCCACCTGACACGGCGGCGGCCGCGGCGGCGGAGGATGACGTGTTCTTCATGGACGAGGAGGCGGAGTTCGGCATGCCGGGCCTGCTGGCCGACATGGCGGAAGCAATGCTGCTGCCGCCGCCGCACCACACATACGCGCCCGACATGGATCTCGACGCCGACGACATGTCGCTGTGGAGCTACTCGATT 585 66.84 MDNVSSSDATSCCSRTSVSDEELLLASRCPKKRAGRKKFKETRHPVFRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMALRGRAACLNFADSASRLPLPPTLHPKDIQKAAAQAAEAFRPPDTAAAAAAEDDVFFMDEEAEFGMPGLLADMAEAMLLPPPHHTYAPDMDLDADDMSLWSYSI 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27256264 27256848 + MC06g1975 Mch6g2535 691982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2535 195 CDD AP2 47 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2535 195 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 193 IPR045277 GO:0003700(InterPro)
Mch6g2535 195 Pfam AP2 domain 45 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2535 195 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2535 195 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2535 195 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2535 195 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Mch6g2535 195 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Mch6g2535 195 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2535 195 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0187 Mch-Chr10:1139004 Mch6g2535 Mch-Chr6:27256264 1.35E-76 dispersed
Mch6g2535 Mch-Chr6:27256264 Mch6g2708 Mch-Chr6:28725137 9.36E-63 dispersed
Mch10g0186 Mch-Chr10:1128708 Mch6g2535 Mch-Chr6:27256264 4.79E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43652 PF00847 AP2 2.60E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2535 - - - 0.0