Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2540 ATGAAGGATCTCGCCTTCCTTCAATGGCGGAACCTCCTCCTTCTTTTGTTACTCCTCGTTCTTTCCTCTCTTCGTTGTTCCCCAGCTTCGCTCCCTCCCGATCAAGCTCGAGCGCTTATGTTGATCAAGGCCTCGTTTAGTAATGTAGCCAACGTGTTGCTGGACTGGGATGATGTTCATGGGGATGATTTCTGCTCATGGCGTGGGGTTTTCTGCGATAATGTTAGCCTTTCTGTTGCTGCTCTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCGGCCATTGGAGATTTGAGGAACTTACAGTCAATAGACTTTCAAGGGAATAAACTAACGGGCCAAATCCCAGATGAGATTGGTAACTGTGGTCTTCTCGTCCATCTGGACTTGTCTGATAATTTGCTTTTTGGAGACATCCCCTTCACGGTATCGAAGCTGAAGCAGCTTGAGTTTTTAAATCTGAAGAACAATCAGTTGACCGGTCCGATCCCTTCGACCCTTACCCAGATTCCGAATCTGAAAACGCTTGATCTTGCACGGAATCAACTTACTGGGGAGATACCTCGATTAATCTATTGGAATGAAGTACTGCAATATCTTGGGTTGCGAGGGAACTTTTTGACGGGTTCGCTGTCCTCTGATATGTGCCAATTGACTGGCTTGTGGTACTTTGATGTAAGGGGCAATAATCTGACTGGCCCGATACCGGAGAGCATAGGGAACTGTACGAGTTTTGAAATTCTGGATATATCCTACAATCAGATCTCAGGGGAGATTCCGTACAACATTGGATTTCTACAAGTGGCTACGTTATCACTACAGGGAAATAGGCTTACTGGTAAGATTCCCGACGTCATTGGATTGATGCAGGCCCTCGCTGTCCTGGATTTGAGTGAGAACGAGCTTGAAGGGCCAATACCACCAATACTTGGCAACTTGTCCTACACTGGAAAATTGTACCTGCACGGGAACAAGTTGACCGGGCCAATTCCTCCAGAGCTGGGCAATATGTCAAAGCTTAGCTACTTGCAATTAAATGACAATCAGCTGATTGGCACAATTCCTTCTGAACTTGGAAAGTTGGATCAATTGTTCGAACTGAATCTTGCTAATAATTACCTTGAAGGACCCATCCCTCACAACATCAGCTCTTGCACTGCATTGAACCAATTCAATGTGCATGGCAACCGTCTTAACGGGTCCATTCCTTTGGGTTTCCAAGATCTGGAGAGTTTGACCTATTTGAATCTTTCGGCAAACAACTTCAAAGGCAGGATTCCTGTTGAGCTCGGACGCATAGTTAACCTCGATACCTTGGATCTATCTCGCAACTACTTTTCGGGTCCTGTTCCTGCATCTATTGGCAATTTGGAACACCTTCTTAGCCTCAATTTGAGTGGCAACCGACTTGTTGGGTCATTGCCAGCAGAATTTGGGAATCTCCGAAGCATTCAGACTATTGATATGTCATTCAACAACTTCTCCGGTAGCATACCCATTGAGTTGGGTCAACTGCAGAATATTATCTCCCTAATTTTGAACAACAACAATTTGCAAGGGAGGATACCTGATCAGCTGACAAATTGTTTCGGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCCGGAATCTTGCCTCCCATGAAAAATTTCTCTCGATTCGAACCAGATAGCTTTATTGGTAATCCGCTGCTATGTGGCAACTGGCTGGGATCGATCTGTGGGCCTTATATTGAAAAATCTCGAGCAATGTTGTCTCGGACAGCAGTTGTTTGTATGACGTTCGGCTTCATTATTTTGCTGTCGATGGTTATAATTGCCGTGTACAAGTCGAATCCATCGAAGCAATTGTTGAAAAGTTCTAGCAAGACTGGGCAAGGCAAGCTTTTGCTTCTGTGTCCCCCAAATCTTGTGGTACTTCACATGGATATGGCTATTCACACCTTCGACGACATTATGAGAACCACGGAGAATCTAAGCGAGAAGTACATTATCGGTTACGGAGCTTCGAGCACTGTGTACAAATGTGTACTGAAGAATTCCCGACCTATTGCAGTTAAGCGACTTTACAACCATTATGCACACAATTTACGGGAGTTTGAGACCGAACTCGAAACCATTGGTAGTATCAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCTCTCTGGGATCTGCTTCATGGACCAGGAAAGAAGGTTAAACTGGATTGGGAAGCCCGTCTGAAGATTGCGGTTGGAGCTGCGCAAGGGCTTGCATATCTTCACCATGATTGCAACCCACGAATCATTCACCGGGATGTTAAGTCTTCGAATATTCTGTTGGATGAAAACTTTGAGGCCCATCTTTCTGATTTTGGGATCGCTAAAAGTATCCCAACTGCCAAAACCCATGCGTCGACTTATGTGCTTGGAACGATTGGCTACATTGATCCAGAGTATGCTCGGACGTCCCGACTCAATGAGAAGTCTGATGTTTATAGCTTCGGCATTGTTCTTCTGGAACTACTAACTGGGAAGAAAGCTGTGGATAATGAGTCCAATCTGCACCAACTGATATTATCCAAGACTGATAACAACACTGTGATGGAGGCTGTCGATCCCGAAGTTTCGGTAACCTGCATGGATTTAGCCCATGTCCGAAAGACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAACGGCCAACCATGCACGAAGTTGCACGAGTGTTGATATCCCTCCAGCCACTGCCACCTACCACAAAACAGACTTTGTTCCCCACGAAAACGTTGGATTATGCACAATTCGTGATCGACAAGGGTCAGAATCAGAACGCGAAAGGGCAGGAGGAGCAGCAGAAAGCAGAAACGGATGTGAATTCTTCGGATGCTCGGTGGTTTGTTCGGTTCGGGGAAGTTATGTCTGAACAACACAGTTTGAACCAATAA 3000 45.27 MKDLAFLQWRNLLLLLLLLVLSSLRCSPASLPPDQARALMLIKASFSNVANVLLDWDDVHGDDFCSWRGVFCDNVSLSVAALNLSNLNLGGEISPAIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLFGDIPFTVSKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGPIPESIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLIGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNRLNGSIPLGFQDLESLTYLNLSANNFKGRIPVELGRIVNLDTLDLSRNYFSGPVPASIGNLEHLLSLNLSGNRLVGSLPAEFGNLRSIQTIDMSFNNFSGSIPIELGQLQNIISLILNNNNLQGRIPDQLTNCFGLANLNLSYNNLSGILPPMKNFSRFEPDSFIGNPLLCGNWLGSICGPYIEKSRAMLSRTAVVCMTFGFIILLSMVIIAVYKSNPSKQLLKSSSKTGQGKLLLLCPPNLVVLHMDMAIHTFDDIMRTTENLSEKYIIGYGASSTVYKCVLKNSRPIAVKRLYNHYAHNLREFETELETIGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGPGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKSIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKTDNNTVMEAVDPEVSVTCMDLAHVRKTFQLALLCTKHNPSERPTMHEVARVLISLQPLPPTTKQTLFPTKTLDYAQFVIDKGQNQNAKGQEEQQKAETDVNSSDARWFVRFGEVMSEQHSLNQ 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27313516 27319948 + MC06g1980 Mch6g2540 691987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2540 999 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 440 925 IPR052592 -
Mch6g2540 999 SMART LRR_typ_2 411 435 IPR003591 -
Mch6g2540 999 SMART LRR_typ_2 507 531 IPR003591 -
Mch6g2540 999 SMART LRR_typ_2 459 482 IPR003591 -
Mch6g2540 999 SMART LRR_typ_2 220 244 IPR003591 -
Mch6g2540 999 SMART LRR_typ_2 148 171 IPR003591 -
Mch6g2540 999 SMART LRR_typ_2 172 196 IPR003591 -
Mch6g2540 999 SMART LRR_typ_2 100 124 IPR003591 -
Mch6g2540 999 SMART LRR_typ_2 291 315 IPR003591 -
Mch6g2540 999 SMART LRR_typ_2 339 363 IPR003591 -
Mch6g2540 999 ProSiteProfiles Protein kinase domain profile. 662 935 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g2540 999 ProSiteProfiles Leucine-rich repeat profile. 174 196 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 738 939 - -
Mch6g2540 999 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Mch6g2540 999 SUPERFAMILY Protein kinase-like (PK-like) 644 928 IPR011009 -
Mch6g2540 999 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 634 737 - -
Mch6g2540 999 Gene3D Phosphorylase Kinase; domain 1 638 737 - -
Mch6g2540 999 Gene3D Transferase(Phosphotransferase) domain 1 738 940 - -
Mch6g2540 999 SUPERFAMILY L domain-like 314 570 - -
Mch6g2540 999 SMART serkin_6 662 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g2540 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 197 306 - -
Mch6g2540 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 307 580 - -
Mch6g2540 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 196 - -
Mch6g2540 999 Gene3D Ribonuclease Inhibitor 196 269 IPR032675 -
Mch6g2540 999 Gene3D Ribonuclease Inhibitor 34 195 IPR032675 -
Mch6g2540 999 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524(InterPro)
Mch6g2540 999 Gene3D Ribonuclease Inhibitor 357 452 IPR032675 -
Mch6g2540 999 Gene3D Ribonuclease Inhibitor 270 356 IPR032675 -
Mch6g2540 999 Gene3D Ribonuclease Inhibitor 453 578 IPR032675 -
Mch6g2540 999 Pfam Leucine rich repeat 437 496 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 SUPERFAMILY L domain-like 32 315 - -
Mch6g2540 999 Pfam Leucine Rich Repeat 534 550 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 366 387 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 223 244 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 248 268 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 320 339 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 413 433 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 294 315 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 174 193 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Leucine Rich Repeat 150 170 IPR001611 GO:0005515(InterPro)
Mch6g2540 999 Pfam Protein kinase domain 665 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g2540 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2540 Mch-Chr6:27313516 Mch7g0889 Mch-Chr7:13444948 4.50E-68 dispersed
Mch11g0457 Mch-Chr11:2860305 Mch6g2540 Mch-Chr6:27313516 3.66E-169 transposed
Mch10g0208 Mch-Chr10:1261576 Mch6g2540 Mch-Chr6:27313516 3.25E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77521 PF00069 Pkinase 8.30E-43 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2540 K20718 - csv:101213139 1747.25