Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2561 ATGGCTTCTTTCTCAGGCTCATGGCTCTTCAACTTCTTGCTGGTTGCATTCATTTTCGCGGTCGTTAGCGGATCAGCGGTGGCCGTGTTCCAGCCAAGCCCGTGGAAGCTCGCTCACGCCACCTTCTATGGCGATGAAACTGCCTCCGAGACCATGGGTGGGGCTTGTGGATATGGAAATTTGTTTGTGAATGGCTACGGAACAGACACAGCCGCGTTGAGCTCTACACTTTTCAACAATGGCTACGCTTGCGGGACTTGCTTTCAGATCAAATGCGTGCAGTCGAAGGCGTGCTACGCAAACTTCGCGTTCACCACTGTGACAGCCACCAACCTCTGCCCGCCGAACTGGTCGCAGGACTCCAACGCGGGCGGCTGGTGCAACCCACCAAGGGTTCACTTCGACATGGCCAAGCCCGCCTTCATGAAGATCGCCGAGTGGAAAGCTGGGATTGTCCCCGTCCAATACCGCAGGGTGCCGTGTGTGAGAAAAGGAGGAGTTCGGTTCAGCCTGCAAGGAAACGGGTACTGGCTATTGGTGTACGTGATGAACGTGGGAGGAGGGGGCGATGTGTATTCAATGGCTGTGAAAGGAAGCAAAACGGGATGGATAAACATGAGCCATAACTGGGGAGCTTCGTATCAAGCTTTTGCCTCTTTGGGTGGCCAATGCCTTTCTTTCAAGATCACTTCATTCACAACTAAAGAGACCATTACTCTGTGGAATGTCATTCCTTCCAATTGGCAAGTTGGGTTGTCCTATAATTCCAATTTCAACTTCCAT 783 52.36 MASFSGSWLFNFLLVAFIFAVVSGSAVAVFQPSPWKLAHATFYGDETASETMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANFAFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAEWKAGIVPVQYRRVPCVRKGGVRFSLQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWINMSHNWGASYQAFASLGGQCLSFKITSFTTKETITLWNVIPSNWQVGLSYNSNFNFH 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27464216 27465830 - MC06g2001 Mch6g2561 692008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2561 261 Gene3D - 166 261 IPR036749 -
Mch6g2561 261 Pfam Expansin C-terminal domain 167 245 IPR007117 -
Mch6g2561 261 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Mch6g2561 261 SUPERFAMILY Barwin-like endoglucanases 14 184 IPR036908 -
Mch6g2561 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Mch6g2561 261 CDD DPBB_EXPA_N 34 161 - -
Mch6g2561 261 Pfam Lytic transglycolase 70 156 IPR009009 -
Mch6g2561 261 Gene3D - 19 161 IPR036908 -
Mch6g2561 261 PANTHER EXPANSIN-A15 16 255 IPR002963 GO:0009664(InterPro)
Mch6g2561 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 166 IPR007112 -
Mch6g2561 261 SMART dpbb_1 70 156 IPR007112 -
Mch6g2561 261 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Mch6g2561 261 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
Mch6g2561 261 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
Mch6g2561 261 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
Mch6g2561 261 PRINTS Expansin signature 141 154 IPR002963 GO:0009664(InterPro)
Mch6g2561 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
Mch6g2561 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Mch6g2561 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Mch6g2561 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Mch6g2561 261 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
Mch6g2561 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Mch6g2561 261 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Mch6g2561 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1475 Mch-Chr10:14704034 Mch6g2561 Mch-Chr6:27464216 1.04E-143 dispersed
Mch6g2561 Mch-Chr6:27464216 Mch9g1554 Mch-Chr9:17825037 4.70E-91 dispersed
Mch6g2561 Mch-Chr6:27464216 Mch2g0893 Mch-Chr2:6077979 7.83E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2561 - - - 0.0