Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g2578 | ATGGACGCCCACTCTCTCCCACCTCCCTTTCACACCCGAGACTTCCATCTCCACCACCACCAGTTCGGCGCCGGCGCCCACAACAACAACAATAACAATAATTCTGAAGAGGAGCACAGCGGCACCACCACACGCGCCGCCCCCAAACGGGATCGCGACGACGACGACAACAACGACGCCGGGGGCGATCCCAGCAACGGCGGCCCTGAGATCACGCGCCGCCCCAGAGGGAGGCCCGCCGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATCACTCGCGACAGCGCCAACGCCCTCCGCACACACGTCATCGAGGTCACCGACGGCTGCGACATCGTCGACAGCGTCGCCACCTTCGCCCGCCGCCGCCAGCGCGGGGTTTGCATTATGAGCGGCACCGGCACCGTCACCAACGTCACCCTCCGCCAGCCGGCCTCCCCCGGTGCAATTGTCAACTTACACGGCCGCTTCGAGATCCTCTCCCTCGCCGGCTCCTTCCTCCCGCCCCCGGCCCCGCCCGCCGCCACCACCCTCACCATCTACCTCGCCGGCGGCCAGGGCCAGGTCGTCGGCGGCAGCGTCGTCGGGACACTCATCGCCTCCGGCCCCGTCGTCATCATGGCCGCCTCCTTCAGCAACGCCGCTTACGAACGCCTCCCGCTCGAGGAGGACGACCAGCCGCAGATGCCGTCCTTGCAAGCCGGCGCAATTGGATCTCCGGACGAAGTGGGGCAGCCGCAGCCGCAGCAGCAAACGACGTCGCATCAGCAGCAGCAGCAACTGTTAGGTGACGGAAATGCGCCGTTATTTCACGGACTCCCTCCGAATCTGCTGAATTCAATCCAAATGCCGTCGGAAGCAGCTTACTGGGCAACGCCTCGTCCTCCCTAC | 894 | 65.77 | MDAHSLPPPFHTRDFHLHHHQFGAGAHNNNNNNNSEEEHSGTTTRAAPKRDRDDDDNNDAGGDPSNGGPEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPQMPSLQAGAIGSPDEVGQPQPQQQTTSHQQQQQLLGDGNAPLFHGLPPNLLNSIQMPSEAAYWATPRPPY | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27638872 | 27639765 | - | MC06g2015 | Mch6g2578 | 692025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g2578 | 298 | MobiDBLite | consensus disorder prediction | 244 | 265 | - | - | |
Mch6g2578 | 298 | Gene3D | - | 100 | 233 | - | - | |
Mch6g2578 | 298 | ProSiteProfiles | PPC domain profile profile. | 97 | 236 | IPR005175 | - | |
Mch6g2578 | 298 | MobiDBLite | consensus disorder prediction | 226 | 278 | - | - | |
Mch6g2578 | 298 | MobiDBLite | consensus disorder prediction | 24 | 41 | - | - | |
Mch6g2578 | 298 | CDD | DUF296 | 101 | 167 | IPR005175 | - | |
Mch6g2578 | 298 | FunFam | AT-hook motif nuclear-localized protein | 100 | 227 | - | - | |
Mch6g2578 | 298 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 97 | 228 | - | - | |
Mch6g2578 | 298 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 34 | 298 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
Mch6g2578 | 298 | MobiDBLite | consensus disorder prediction | 42 | 59 | - | - | |
Mch6g2578 | 298 | MobiDBLite | consensus disorder prediction | 22 | 91 | - | - | |
Mch6g2578 | 298 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 101 | 213 | IPR005175 | - | |
Mch6g2578 | 298 | PIRSF | ESCAROLA | 11 | 298 | IPR014476 | GO:0003680(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0275 | Mch-Chr5:1867047 | Mch6g2578 | Mch-Chr6:27638872 | 2.47E-84 | dispersed | |
Mch6g2578 | Mch-Chr6:27638872 | Mch7g0752 | Mch-Chr7:12143320 | 8.72E-97 | dispersed | |
Mch6g2578 | Mch-Chr6:27638872 | Mch6g2581 | Mch-Chr6:27682019 | 3.11E-20 | proximal | |
Mch6g0415 | Mch-Chr6:2752196 | Mch6g2578 | Mch-Chr6:27638872 | 1.29E-76 | transposed | |
Mch10g0229 | Mch-Chr10:1411474 | Mch6g2578 | Mch-Chr6:27638872 | 2.44E-22 | wgd |
Pathway information
