Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2578 ATGGACGCCCACTCTCTCCCACCTCCCTTTCACACCCGAGACTTCCATCTCCACCACCACCAGTTCGGCGCCGGCGCCCACAACAACAACAATAACAATAATTCTGAAGAGGAGCACAGCGGCACCACCACACGCGCCGCCCCCAAACGGGATCGCGACGACGACGACAACAACGACGCCGGGGGCGATCCCAGCAACGGCGGCCCTGAGATCACGCGCCGCCCCAGAGGGAGGCCCGCCGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATCACTCGCGACAGCGCCAACGCCCTCCGCACACACGTCATCGAGGTCACCGACGGCTGCGACATCGTCGACAGCGTCGCCACCTTCGCCCGCCGCCGCCAGCGCGGGGTTTGCATTATGAGCGGCACCGGCACCGTCACCAACGTCACCCTCCGCCAGCCGGCCTCCCCCGGTGCAATTGTCAACTTACACGGCCGCTTCGAGATCCTCTCCCTCGCCGGCTCCTTCCTCCCGCCCCCGGCCCCGCCCGCCGCCACCACCCTCACCATCTACCTCGCCGGCGGCCAGGGCCAGGTCGTCGGCGGCAGCGTCGTCGGGACACTCATCGCCTCCGGCCCCGTCGTCATCATGGCCGCCTCCTTCAGCAACGCCGCTTACGAACGCCTCCCGCTCGAGGAGGACGACCAGCCGCAGATGCCGTCCTTGCAAGCCGGCGCAATTGGATCTCCGGACGAAGTGGGGCAGCCGCAGCCGCAGCAGCAAACGACGTCGCATCAGCAGCAGCAGCAACTGTTAGGTGACGGAAATGCGCCGTTATTTCACGGACTCCCTCCGAATCTGCTGAATTCAATCCAAATGCCGTCGGAAGCAGCTTACTGGGCAACGCCTCGTCCTCCCTAC 894 65.77 MDAHSLPPPFHTRDFHLHHHQFGAGAHNNNNNNNSEEEHSGTTTRAAPKRDRDDDDNNDAGGDPSNGGPEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPQMPSLQAGAIGSPDEVGQPQPQQQTTSHQQQQQLLGDGNAPLFHGLPPNLLNSIQMPSEAAYWATPRPPY 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27638872 27639765 - MC06g2015 Mch6g2578 692025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2578 298 MobiDBLite consensus disorder prediction 244 265 - -
Mch6g2578 298 Gene3D - 100 233 - -
Mch6g2578 298 ProSiteProfiles PPC domain profile profile. 97 236 IPR005175 -
Mch6g2578 298 MobiDBLite consensus disorder prediction 226 278 - -
Mch6g2578 298 MobiDBLite consensus disorder prediction 24 41 - -
Mch6g2578 298 CDD DUF296 101 167 IPR005175 -
Mch6g2578 298 FunFam AT-hook motif nuclear-localized protein 100 227 - -
Mch6g2578 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 228 - -
Mch6g2578 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 298 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Mch6g2578 298 MobiDBLite consensus disorder prediction 42 59 - -
Mch6g2578 298 MobiDBLite consensus disorder prediction 22 91 - -
Mch6g2578 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
Mch6g2578 298 PIRSF ESCAROLA 11 298 IPR014476 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0275 Mch-Chr5:1867047 Mch6g2578 Mch-Chr6:27638872 2.47E-84 dispersed
Mch6g2578 Mch-Chr6:27638872 Mch7g0752 Mch-Chr7:12143320 8.72E-97 dispersed
Mch6g2578 Mch-Chr6:27638872 Mch6g2581 Mch-Chr6:27682019 3.11E-20 proximal
Mch6g0415 Mch-Chr6:2752196 Mch6g2578 Mch-Chr6:27638872 1.29E-76 transposed
Mch10g0229 Mch-Chr10:1411474 Mch6g2578 Mch-Chr6:27638872 2.44E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2578 - - - 0.0