Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2635 ATGCCATATCCCGACGTGTGCAAACACTTCTTTAACGGCCAAAATTTCGACCCAAGGAAGCTATCCGACTTAAAAAAAATGGCTCTCAAAATCGCCATGGACAGAGCTCTTGTAGCAGAGACCCTCACGAAGCAGCTCGGCCAAAAATGCCGAAACCAAAAGGAGAGAGCCGCGTGGGCCGATTGCGTGGAGCTTTTCCAATCCACAATCCTCCACCTCAACAAAACAGTCTCCGACAAATGCTCTGGTTTCGATATTCAGACATGGCTCAGCTCCGCACTCACCAACCTCGACACGTGTCGCGCTGGGTTTGCAGACCTCCACGTGGCGGACTACGGCGCCGTTTTTCCGCTGTTGGCGAATAATAACGTCACCAAGCTTATAAGCAACAGTTTGGCGATGAATAACTGCTCGGAATCCGAATCCGAACTGGGGGCAGGTTATAGAGGCGGGTTTCCGACATGGGTTCGGGGTGGGGACCGGCGGCTGCTGCAGGCGGCATCGCCGAAGGCGGATGTGGTGGTTGCGCAGGATGGGTCCGGGAACTACCGGACGATTGCGGCGGCGTTGGCGGCGGCGGAGAAGAGGAGCGGGAGTGGGAGATTTGTGATACATGTGAAGAGAGGGGTTTATAAGGAGAATTTGGTGATCGGAAGTAAGTTGAAGAATATAATGCTTTTGGGGGATGGATTGAGGTACACCATTATTACTGGGAGTAGAAGCGTTGGAGGAGGTTCCACCACTTTCAATTCTGCTACTGTTGCTGTGACTGGAGAACGTTTCATTGCTCGTGGTATCACATTCCGCAACACTGCCGGACCTCAAAACCACCAAGCAGTAGCGCTTCGGTCAGGCTCCGATCTCTCTGTCTTCTTTCAATGCAGTTTCGAGGGATATCAAGACACTCTCTACGTCCATTCTCAAAGACAATTCTACAGAGAGTGCTACATTTACGGCACGGTCGATTTCATCTTCGGTAATGCTGCTGTGGTCCTCCAAAATTGCATGATATACGCAAGAAAACCTATCCCTGGCCAGCAATGCGTCGTGACCGCCCAAGGCCGCACGGACCCGAACCAAAACACCGGGATCTCGATCCACAACTCGAGGGTGATGGCTGCAGCCGACCTCAAACCGGTTCAAAGCTCGGTTAGAACCTACTTGGGAAGGCCATGGAAGGAGTACTCTCGCACAGTTTACTTGAAAAATTACTTGGATGGGTTGGTGAACCCTGCAGGGTGGTTGGAATGGAGTGGTAATTTTGCCCTTAATACATTGTACTATGGAGAGTATAACAATTTTGGGCCTGGTTCTTCTACTAGCAACAGAGTGAAATGGAAGGGTTATAGAGTAATTACAAGTGCCACAGAAGCATCAAAGTTTACTGTGGAGAATTTTATTGCTGGGAAGTCATGGCTGCCTGGGACTGGAGTGCCATTCACTGTTGGCCTTTGA 1455 50.72 MPYPDVCKHFFNGQNFDPRKLSDLKKMALKIAMDRALVAETLTKQLGQKCRNQKERAAWADCVELFQSTILHLNKTVSDKCSGFDIQTWLSSALTNLDTCRAGFADLHVADYGAVFPLLANNNVTKLISNSLAMNNCSESESELGAGYRGGFPTWVRGGDRRLLQAASPKADVVVAQDGSGNYRTIAAALAAAEKRSGSGRFVIHVKRGVYKENLVIGSKLKNIMLLGDGLRYTIITGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPQNHQAVALRSGSDLSVFFQCSFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAAADLKPVQSSVRTYLGRPWKEYSRTVYLKNYLDGLVNPAGWLEWSGNFALNTLYYGEYNNFGPGSSTSNRVKWKGYRVITSATEASKFTVENFIAGKSWLPGTGVPFTVGL 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28118747 28121161 + MC06g_new0573 Mch6g2635 692082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2635 484 FunFam Pectinesterase 166 484 - -
Mch6g2635 484 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 137 IPR035513 -
Mch6g2635 484 ProSitePatterns Pectinesterase signature 2. 317 326 IPR033131 -
Mch6g2635 484 SMART PMEI_2 1 134 IPR006501 GO:0004857(InterPro)
Mch6g2635 484 Pfam Pectinesterase 172 469 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch6g2635 484 SUPERFAMILY Pectin lyase-like 168 483 IPR011050 -
Mch6g2635 484 CDD PMEI-like_3 2 136 - -
Mch6g2635 484 Gene3D - 166 484 IPR012334 -
Mch6g2635 484 NCBIfam pectinesterase inhibitor domain 20 136 IPR006501 GO:0004857(InterPro)
Mch6g2635 484 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 137 IPR035513 -
Mch6g2635 484 PANTHER PECTINESTERASE 3 474 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch6g2635 484 ProSitePatterns Pectinesterase signature 1. 198 217 IPR018040 -
Mch6g2635 484 Pfam Plant invertase/pectin methylesterase inhibitor 2 134 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0246 Mch-Chr10:1519008 Mch6g2635 Mch-Chr6:28118747 4.10E-193 dispersed
Mch10g0248 Mch-Chr10:1522405 Mch6g2635 Mch-Chr6:28118747 1.84E-260 dispersed
Mch2g1641 Mch-Chr2:13950534 Mch6g2635 Mch-Chr6:28118747 1.09E-95 dispersed
Mch4g1433 Mch-Chr4:17781567 Mch6g2635 Mch-Chr6:28118747 2.52E-158 dispersed
Mch5g0295 Mch-Chr5:2003281 Mch6g2635 Mch-Chr6:28118747 8.63E-199 dispersed
Mch5g0296 Mch-Chr5:2020479 Mch6g2635 Mch-Chr6:28118747 3.17E-132 dispersed
Mch6g2635 Mch-Chr6:28118747 Mch6g2637 Mch-Chr6:28128557 1.94E-193 dispersed
Mch6g2635 Mch-Chr6:28118747 Mch6g2636 Mch-Chr6:28123333 2.07E-272 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2635 K01051 - csv:101216005 813.142