Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2636 ATGGCTCGTAAAATCGCCATGGACAGAGCTCTCGCAGCAGAAACTGTCACAAGGCAACTCGACCTTAATAGCCGTACCGAAAAAGAGAGAGCCGCATGGGCCGATTGCTTGCAGCTTTACCAAATCACAATCCTCCAACTCAACAAAACATTCTCCGATAAATGTTCTGATTTCGATATTCAGACGTGGCTCAGCTCTGCCCTCACCAATCTCGACACGTGTCGCACCGGGTTCACGGACCTCCACGTGGCTTTCCCGCTGCTGGCGAATAATAACCTGACCAAGCTTATAAGCAACAGTTTGGCGATGAATAACTACTCGGAATCCGAATTAGAGACAGGTTATATTGGGGAGTTTCCGACGTGGGTTCGGGCCGAGGACCGGCGGCTATTGCATTTGGCATGGCCGAAGGCGGATCTGGTGGTGGCGCAGGATGGGTCGGGGAATTATCGGACGATTGCGGCGGCGTTGGCGGCGGCGGGGAGGAGAAGCGGGAGCGAGAGATTTGTGATATATGTGAAGAGAGGGGTTTATGAGGAGAATTTGATGATTGGGAATGAGATGAAGAATATAATGCTTTTAGGGGATGGATTAAAATACACCATTATTACTGGGAGTAGAAGTGTTGGAGGAGGTTTCACAACTTTCAATTCTGCTACTGTTTTTGTGAGCGGGGAACATTTTATTGCTCGTGGCATCACATTTCGGAATACTGCCGGACCCGAAAACTACCAAGCGGTAGCCCTCTTCTCAGGCTCCGATCTCTCCGTATTTTTCCGGTGCCGATTCGAGGGATATCAAGACACTCTCTACGCCCATTCCCAAAGACAATTCTATAGAGAATGCTACATCTACGGCACCATCGATTTCATCTTCGGCAACGCGGCGGTTGTCCTTCAGAACTGCATGATCTATGCAAGAAAACCTATCCATGGGCAGCAATGCGTCGTGACCGCCCAAGGCCGCATCGACCCGAACCAAAACACCGGGATCTCGATCCACAACTCGAGGGTGATGGCCACGGCCGATCTCGAACCGGTTCGAAGCTCGGTTGGAATCTACTTGGGGAGGCCATGGAAGGAGTACTCTCGCACAGTTTACTTGCAAAACTACTTGGATGGCTTGGTGAAGCTTGCAGGGTGGTCAGAATGGAGTGGTAATTTTGCCTTTAATACATTGTATTATGGAGAGTATAAGAATTTTGGACCTGGTTCTTCTACTAGCAATAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCCACAGAAGCATCAAAATTTACTGTTGGGAATTTTATTGGTGGGAGCTCATGGCTGCCTTGGACTGGAGTGCCATTCACTGCTAGCCTTTGA 1356 49.19 MARKIAMDRALAAETVTRQLDLNSRTEKERAAWADCLQLYQITILQLNKTFSDKCSDFDIQTWLSSALTNLDTCRTGFTDLHVAFPLLANNNLTKLISNSLAMNNYSESELETGYIGEFPTWVRAEDRRLLHLAWPKADLVVAQDGSGNYRTIAAALAAAGRRSGSERFVIYVKRGVYEENLMIGNEMKNIMLLGDGLKYTIITGSRSVGGGFTTFNSATVFVSGEHFIARGITFRNTAGPENYQAVALFSGSDLSVFFRCRFEGYQDTLYAHSQRQFYRECYIYGTIDFIFGNAAVVLQNCMIYARKPIHGQQCVVTAQGRIDPNQNTGISIHNSRVMATADLEPVRSSVGIYLGRPWKEYSRTVYLQNYLDGLVKLAGWSEWSGNFAFNTLYYGEYKNFGPGSSTSNRVKWKGYRVITSATEASKFTVGNFIGGSSWLPWTGVPFTASL 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28123333 28125135 + MC06g_new0574 Mch6g2636 692083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2636 451 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 106 IPR035513 -
Mch6g2636 451 SMART PMEI_2 1 103 IPR006501 GO:0004857(InterPro)
Mch6g2636 451 PANTHER PECTINESTERASE 6 441 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch6g2636 451 FunFam Pectinesterase 134 451 - -
Mch6g2636 451 Pfam Pectinesterase 139 436 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch6g2636 451 SUPERFAMILY Pectin lyase-like 134 449 IPR011050 -
Mch6g2636 451 Pfam Plant invertase/pectin methylesterase inhibitor 2 103 IPR006501 GO:0004857(InterPro)
Mch6g2636 451 ProSitePatterns Pectinesterase signature 2. 284 293 IPR033131 -
Mch6g2636 451 NCBIfam pectinesterase inhibitor domain 5 106 IPR006501 GO:0004857(InterPro)
Mch6g2636 451 CDD PMEI-like_3 4 105 - -
Mch6g2636 451 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 106 IPR035513 -
Mch6g2636 451 Gene3D - 135 451 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2636 Mch-Chr6:28123333 Mch6g2638 Mch-Chr6:28134168 8.99E-159 dispersed
Mch6g2635 Mch-Chr6:28118747 Mch6g2636 Mch-Chr6:28123333 2.07E-272 tandem
Mch6g2636 Mch-Chr6:28123333 Mch6g2637 Mch-Chr6:28128557 4.50E-205 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2636 K01051 - csv:101216005 689.878