Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2652 ATGCAGGGGAGAGAAGATGAATCAGATAACAATTTTAAGTTGCTGCCTTCCCCTTCTCCTGTTGTAGCAGTAGCTATCAGTGGGAAGAGAAACAGTAAATATATAATAAGATGGTCATTGGAGAAGTTTGTACCTGAGGGCATCATTAATTTCAAGATGTTACACATCATCCCAAGGATTACTTCTGTCCCAACCCCAATGGGAAACTCGATTCCTCTTTCACAAGTTCGTGATGATGTTGCTGTGGCTTATAGGAAAGAAATAGGGTGGCAGACAAGCGAAAAGCTTCTTCCATATAAGAAGATGTTTACTCAAAGAAAGGTTCAACTCGACATCGTGACACTTGAAGCGGATGATGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGATTTTTCTCAAGGAAACTGAATGGTCTATCCTCAAGAATATCAGCTCTTGCACCAAGATATTGTACAGTCTATGCTATTTCAAAAGGAAAATTAGCCTCAATACGGCCACCTGATACAGAGACAAACGTGAGCATCAAAGATAACATGAGTGAAGCAAGTTCAGCGAATAGCTACTCAAGCTATACTTCTAGCTCTCCTACAGATGGCGGCTCAAGCTTAGTGACTTCCTACTCTCATTTTCATTCTCCTTCCTCTTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATCAACCAACCTTTTCTTACGACGAAAACAAACTCCATTAAAGGCAGTCATTCTAGATGTCAGTCAACTCAGTCCATTGAGATTGAGGAGCAGGTGGATGGCATTCGTTCCTCTTCCTATGCTTCAGATTGTGCACAAACATTGAGTCGGGCCTCTAGTTGTAGGAGCTTGCCAACCGATAGCCAGTCTTGGGTTTCTGATGAAGCTTCCTCCTCGGGCGCATTCAATGATTATTCTTCATGTGAAAGCCAGGCGGACGTCAACTTTGAGCTTGAAAAGTTGAGAATCGAACTTAGACATGCGAGAGGAATGTACGCAATTGCTCAGCGAGAGACAATCGATGCATCCCGAAAGCTGAGCCATCTAAATAAACAACGATCCGAGGAAGCTAGGAAGCTTGAGGAGATCAAAAGTAAAGAGAAGGCTGCTAGAGAATTTGCGAGGGAAGAGAAAGCGAAACATGAAGCGCTGAGAAGGGAAGCGATAGATGTTAAAGAACATGCCGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACGAAAGCCCTTCAAGATGTCAAAGAGAAGGGCAAGCATGAGAATGCTCTTCAAGGACCTCTTCAACAATACCAATATTTTCAGTGGGAAGATATTGTTTCTGCTACATCATCTTTCTCTGAGGATCTAAAGATTGGAATGGGAGCATATGGAACAGTTTACAAGTGCAGTTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGGTCAAAAAAATATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCACCATCCCCATCTGCTGCTCCTCCTTGGTGCGTGTCCGGATAAGAGTTGCCTGGTTTATGAGTACATGGAGAATGGTAGCTTGGAGGATCGGTTGTTCCGAAGAAGCAATACTCCTGCAATCCCGTGGTACGAGAGGTATCGAATTGCTTGGGAAATAGCCTCTGTGCTTGTCTTTCTACACAGCTCGAAGCAAAAACCGATAATCCACCGCGATCTTAAGCCAGCAAACATCTTACTTGACCAAAACCTCGTGAGCAAAATCGGCGACGTCGGCCTTTCTACAGTGTTTAGTTCAGATCCTGCTATGTCTACCGCATTCAAGGATAGTGGACCAGTTGGGACTCTATGTTACATAGATCCCGAGTATCAACGAACTGGATTAATCTCACCTAAATCTGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTAATAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTACTAAATATTGTGGATATTGAAGCTGGGAACTGGCCCGTTGAAGAGACATATGAATTGGCGAGATTAGGACTTCGGTGCGCGGAGCTGCAACGTAAAGATAGGCCCGACTTAAAGGATCAAGTACTTCCTGCACTGCTGAGATTGAAAGAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAAAGTTCCAGCTGCGACTCCTAACCATTTCATCTGCCCAATTCTTCAGGACTTGATGGATGACCCTTGTGTCGCAGCCGATGGTTACACATACGATCGTCGAGCGATACAGAAGTGGCTTCAAGAGAACAATCACTCACCGGTGACGAATTTGCCGCTGCCAGATAAGATTTTGATTCCAAATTACAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAACGCTAA 2439 43.79 MQGREDESDNNFKLLPSPSPVVAVAISGKRNSKYIIRWSLEKFVPEGIINFKMLHIIPRITSVPTPMGNSIPLSQVRDDVAVAYRKEIGWQTSEKLLPYKKMFTQRKVQLDIVTLEADDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRYCTVYAISKGKLASIRPPDTETNVSIKDNMSEASSANSYSSYTSSSPTDGGSSLVTSYSHFHSPSSSLPLQRFQALSTINQPFLTTKTNSIKGSHSRCQSTQSIEIEEQVDGIRSSSYASDCAQTLSRASSCRSLPTDSQSWVSDEASSSGAFNDYSSCESQADVNFELEKLRIELRHARGMYAIAQRETIDASRKLSHLNKQRSEEARKLEEIKSKEKAAREFAREEKAKHEALRREAIDVKEHAEREGIYRKEAETKALQDVKEKGKHENALQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAYGTVYKCSLHHTTVAVKVLHSRDGQKNMQFLQELEILSKIHHPHLLLLLGACPDKSCLVYEYMENGSLEDRLFRRSNTPAIPWYERYRIAWEIASVLVFLHSSKQKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFSSDPAMSTAFKDSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLITAKPAVALTHVVETAIDNCTLLNIVDIEAGNWPVEETYELARLGLRCAELQRKDRPDLKDQVLPALLRLKEVADEARNSASKVPAATPNHFICPILQDLMDDPCVAADGYTYDRRAIQKWLQENNHSPVTNLPLPDKILIPNYSLLSAIVEWNSRKR 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28210210 28218118 - MC06g2075 Mch6g2652 692099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2652 812 Coils Coil 332 352 - -
Mch6g2652 812 Pfam Protein tyrosine and serine/threonine kinase 464 715 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g2652 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 742 812 IPR013083 -
Mch6g2652 812 ProSiteProfiles U-box domain profile. 741 812 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch6g2652 812 CDD STK_N 21 173 - -
Mch6g2652 812 Pfam U-box domain 743 811 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch6g2652 812 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 161 - -
Mch6g2652 812 CDD RING-Ubox_WDSUB1-like 743 797 - -
Mch6g2652 812 Gene3D Transferase(Phosphotransferase) domain 1 532 741 - -
Mch6g2652 812 Coils Coil 360 412 - -
Mch6g2652 812 PANTHER OS02G0152300 PROTEIN 22 804 IPR051348 -
Mch6g2652 812 ProSitePatterns Protein kinases ATP-binding region signature. 465 486 IPR017441 GO:0005524(InterPro)
Mch6g2652 812 SMART serkin_6 459 721 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g2652 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g2652 812 Gene3D Phosphorylase Kinase; domain 1 427 531 - -
Mch6g2652 812 SUPERFAMILY RING/U-box 730 810 - -
Mch6g2652 812 SUPERFAMILY Protein kinase-like (PK-like) 440 715 IPR011009 -
Mch6g2652 812 ProSiteProfiles Protein kinase domain profile. 459 722 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g2652 812 SMART Ubox_2 745 807 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0284 Mch-Chr3:3974723 Mch6g2652 Mch-Chr6:28210210 2.37E-27 dispersed
Mch5g0393 Mch-Chr5:2688821 Mch6g2652 Mch-Chr6:28210210 6.21E-110 dispersed
Mch6g2652 Mch-Chr6:28210210 Mch8g2590 Mch-Chr8:29058551 1.71E-118 dispersed
Mch6g2652 Mch-Chr6:28210210 Mch8g3226 Mch-Chr8:34326654 2.01E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77526 PF07714 PK_Tyr_Ser-Thr 5.90E-40 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2652 - - - 0.0