Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2707 ATGGCTGACCAAAAGCTTCCAATTAATGACAGCCAAATGGACCAATCCCCTCATCAGCCAGCTCCTCCATCGCACCCCATTGACCCTTCCCCTCCTGTCCCCACATCCCAATTTCCAAAATCCAAAGAGCCTAATTCTTCTTCATCGTCCATGGCTTCCTCTATCTCCACCAAGAAGCATGCTTTGTATAGAGGAATCCGGTGTCGGAGCGGCAAATGGGTGTCCGAGATCCGTGAGCCCCGTAAGACTACTCGCATATGGCTCGGCACATTCCCTACCCCGGAGATGGCTGCTGCTGCTTACGACGTTGCCGCTCTCGCCCTCCGAGGCGGCGACGCTGTCCTCAACTTTCCTGCTTCTATTGGATCCTACCCTATTCCTCCTTCTACCTCGCCGGTGGATATACGTACTGCTGCCTCTGCTGCTGCCGCTATCGCTGCCAATAATGCGTTGAAGAAGGGGGAGGCCGTGGGGCAATCCGCCGGTGGTGGTAGTGTTGAAGATACGACGACGACCGTTGCTACCGATAGTACTACGACGTCGCCAGAGTTTGTGGATGAGGAGGAACTCTTTGGGATGCCGAGTTTGCTGGCGGACATGGCGGAGGGGATGATGGTGTCGCCGCCGAGAATGAACTCGCCGCCGCCGTCCGATGACTCGATGGAGAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTC 702 55.41 MADQKLPINDSQMDQSPHQPAPPSHPIDPSPPVPTSQFPKSKEPNSSSSSMASSISTKKHALYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTPEMAAAAYDVAALALRGGDAVLNFPASIGSYPIPPSTSPVDIRTAASAAAAIAANNALKKGEAVGQSAGGGSVEDTTTTVATDSTTTSPEFVDEEELFGMPSLLADMAEGMMVSPPRMNSPPPSDDSMENSDGTESLWSYF 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28712811 28713512 + MC06g2124 Mch6g2707 692154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2707 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 41 233 IPR045277 GO:0003700(InterPro)
Mch6g2707 234 MobiDBLite consensus disorder prediction 19 38 - -
Mch6g2707 234 FunFam Ethylene-responsive transcription factor 2 61 119 - -
Mch6g2707 234 MobiDBLite consensus disorder prediction 216 234 - -
Mch6g2707 234 SMART rav1_2 62 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2707 234 Pfam AP2 domain 63 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2707 234 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2707 234 MobiDBLite consensus disorder prediction 1 56 - -
Mch6g2707 234 MobiDBLite consensus disorder prediction 39 56 - -
Mch6g2707 234 MobiDBLite consensus disorder prediction 163 180 - -
Mch6g2707 234 MobiDBLite consensus disorder prediction 157 180 - -
Mch6g2707 234 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677(InterPro)
Mch6g2707 234 ProSiteProfiles AP2/ERF domain profile. 62 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2707 234 CDD AP2 63 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2707 234 MobiDBLite consensus disorder prediction 206 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1649 Mch-Chr5:17325801 Mch6g2707 Mch-Chr6:28712811 2.91E-39 dispersed
Mch6g2707 Mch-Chr6:28712811 Mch8g0335 Mch-Chr8:2362414 2.21E-26 dispersed
Mch6g2707 Mch-Chr6:28712811 Mch6g2708 Mch-Chr6:28725137 2.31E-30 tandem
Mch10g0186 Mch-Chr10:1128708 Mch6g2707 Mch-Chr6:28712811 5.93E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43661 PF00847 AP2 1.00E-10 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2707 - - - 0.0