Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2708 TTCTTCGGTCAATTTTCCGATCCTCTTCCTTACGGCGACAAGTCGGAATCGTCGACGTGGTCGGACGCCGGCACGCCGGTTACTCACCCGGCGGCGCACTCCGATGAGGAAGTGATACTGGCGGCGAGCCGGCCGAAGCGGCGGGCCGGGCGGAGGGTTTTTAAGGAGACGAGGCACCCGGTTTACCGGGGGGTCCGGCGGAGGAACAACGATAAATGGGTGTGCGAGTTGCGTGAGCCGAATAAGAAGTCTAGGATCTGGCTCGGGACGTATCCGACGGCGGAGATGGCAGCGCGTGCGCACGACGTCGCGGCACTCGCGTTGAGAGGCAAGTCGGCTTGCCTCAACTTTGCTGACTCGGCGTGGCGATTTCCCATTCCGGAGTCTACTGATCCGAGTGTCATCCGGGACGCGGCGGCTCGGGCGGCCAATGAGTGCAAGGATGAAGAGGACGACGCCGTTTTGGAAGGCGGAGAAGGAGAACTCCCCGCCAGGTGGGAGCCAGCTCCTCCGGCTTACGTGGACGATGAGGCCTTGTCCAACATGCCGATGCTGCTTGCCAGCATGGCGGAGGGACTTCTTCTCTCTCCTCCTTCTTTTTGCATGCATGACGACGTGGAGTGGGGTGACGTGGACATGAGTGATGACATGTCGCTGTGGAGCTTT 666 61.26 FFGQFSDPLPYGDKSESSTWSDAGTPVTHPAAHSDEEVILAASRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKSRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPESTDPSVIRDAAARAANECKDEEDDAVLEGGEGELPARWEPAPPAYVDDEALSNMPMLLASMAEGLLLSPPSFCMHDDVEWGDVDMSDDMSLWSF 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28725137 28725802 + MC06g2125 Mch6g2708 692155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2708 222 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2708 222 MobiDBLite consensus disorder prediction 11 25 - -
Mch6g2708 222 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 222 IPR045277 GO:0003700(InterPro)
Mch6g2708 222 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2708 222 MobiDBLite consensus disorder prediction 1 34 - -
Mch6g2708 222 CDD AP2 62 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2708 222 Pfam AP2 domain 60 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2708 222 SMART rav1_2 61 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2708 222 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677(InterPro)
Mch6g2708 222 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2708 222 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2708 222 FunFam Ethylene-responsive transcription factor 2 60 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1648 Mch-Chr5:17312411 Mch6g2708 Mch-Chr6:28725137 1.62E-37 dispersed
Mch6g2535 Mch-Chr6:27256264 Mch6g2708 Mch-Chr6:28725137 9.36E-63 dispersed
Mch6g2708 Mch-Chr6:28725137 Mch9g0319 Mch-Chr9:2386528 3.41E-30 dispersed
Mch6g2707 Mch-Chr6:28712811 Mch6g2708 Mch-Chr6:28725137 2.31E-30 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43662 PF00847 AP2 2.10E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2708 - - - 0.0