Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2719 ATGCAGGAGCCCGGGTTGGGAATGATGACTGCCGGTGGCTCTAGTGGTGCTCTAAGCGGCGACGTTTCGATTTCCGGCGAGGCGGCGGCGGCTCACACGGCCCAACTCAAGGCGGAGATTGCTACTCATCCACTCTATGAGCAGCTTTTAGCCGCCCACGTCGCTTGCCTCCGCGTCGCGACGCCGATCGATCAGCTTCCGATGATCGATGCTCAGTTGTCTCAGTCGCACCATATTCTGAGATCTTACGCTTCCCAGCATCACCAACAAGGCCATTCCATTTCGCCTCACGAGCGCCAAGACCTCGACAACTTTCTGGCGCAGTATATGATCGTCTTGTGCTCTTTCAAAGAGCAGCTCCAACAGCACGTTAGAGTCCACGCAGTGGAAGCCGTCATGGCCTGCCGTGAAATTGAAAACACTTTACAAGCTCTTACAGGAGTGAGCTTGGGGGAAGGCACTGGTGCAACAATGTCGGACGACGAAGACGACATCCCAATGGACTTCTCGCTCGATCAATCGGGCGCCGACGCCCATGACATGATGGGGTTCGGGCCGCTGCTTCCTACTGAATCTGAACGGTCATTGATGGAGAGGGTTCGGCAGGAACTGAAGATCGAGCTGAAACAGGGTTTCAAATCAAGAATTGAAGATGTGAGAGAGGAGATATTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGGGACACAACTACGGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGACAAGGCGAAGCTCGTTGAGGAGACGGGGCTCCAGCTGAAACAAATAAACAACTGGTTCATCAACCAAAGAAAGCGCAACTGGCACAGCAATTCTCAGTCAGTAACATCCTTGAAGTCCAAGCGCAAGAGATAA 903 52.82 MQEPGLGMMTAGGSSGALSGDVSISGEAAAAHTAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASQHHQQGHSISPHERQDLDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28806765 28810786 - MC06g2135 Mch6g2719 692166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2719 300 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677(InterPro)
Mch6g2719 300 SUPERFAMILY Homeodomain-like 225 290 IPR009057 -
Mch6g2719 300 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677(InterPro)
Mch6g2719 300 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 286 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch6g2719 300 Pfam KNOX1 domain 36 77 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch6g2719 300 FunFam homeobox protein knotted-1-like 3 isoform X1 224 285 - -
Mch6g2719 300 CDD homeodomain 226 287 IPR001356 GO:0003677(InterPro)
Mch6g2719 300 SMART KNOX2_2 92 147 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch6g2719 300 SMART HOX_1 225 290 IPR001356 GO:0003677(InterPro)
Mch6g2719 300 Pfam KNOX2 domain 96 146 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch6g2719 300 Gene3D - 222 296 - -
Mch6g2719 300 SMART KNOX1_2 34 78 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch6g2719 300 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2719 Mch-Chr6:28806765 Mch8g0482 Mch-Chr8:3376186 3.98E-125 dispersed
Mch6g2719 Mch-Chr6:28806765 Mch11g0526 Mch-Chr11:3387090 7.29E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43663 PF03791 KNOX2 2.90E-17 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2719 - - - 0.0