Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2735 ATGGGCATTAAGGGTTTAACCAAGCTCTTAGCCGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAGAATCGCAATCGATGCTAGCATGAGTATTTATCAATTTCTTATTGTCGTCGGAAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGGATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAGAAACAAGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGAGGACCTTGCAGATGCAATGGAGGCTGGCAACAAGGAGGACATCGAGAAATTCAGTAAAAGGACGGTGAAGGTTACGAAACAGCACAATGAAGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCTGAAGCAGAGGCACAATGTGCCGCACTTTGCAAATTAGGAAAGGCAATTCATATGTTTCAGGTTTATGCTGTGGCTTCGGAAGACATGGATTCGCTAACATTTGGATCTCCCAAATTTCTTCGTCATTTAATGGATCCTAGCTCAAGGAAGATTCCGGTTATGGAATTTGAAGTTGCGAAGATTTTGGAGGAGCTGAACCTTTCCATGGACCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGGCAGACTGCCCTAAAGCTTATACGTCAACATGGGTCTATAGAAACTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCAAATGATTGGCCTTATCAAGAGGCTCGACAGCTTTTTAAAGAACCACTAGTGTGTACAGACGAAGAGCAGCTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTGCTAACATTTTTGGTGAATGAGAATGGGTTCAACAGCGATAGAGTGACGAAGGCAGTGGAGAAAATCAAAGCAGCTAAGAACAAGTCGTCACAGGGCCGGTTGGAGTCATTTTTCAAGCCTGTAACTAATCCTTCAGTACCCATTAAGCGAAAGGTAACCAAATGTGTAATTAGATCTCCCAAACCAGGAGTCCAGCGTAAATACTCTCCACAAGCTTTTTATTCGTCAAGGACAAAGGTCATTGGCAGCCTAGGCATGTCAATGTTAAACCTTTCTTCCAAGTACTCGGGGTCGGGGCCATTAGTTATGGCTGTTTGCTTCGGCACATGA 1272 44.03 MGIKGLTKLLADNAPKGMKEQKFESYFGRRIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAMEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKAIHMFQVYAVASEDMDSLTFGSPKFLRHLMDPSSRKIPVMEFEVAKILEELNLSMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINKERYQIPNDWPYQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRLESFFKPVTNPSVPIKRKVTKCVIRSPKPGVQRKYSPQAFYSSRTKVIGSLGMSMLNLSSKYSGSGPLVMAVCFGT 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28928715 28937730 - MC06g2150 Mch6g2735 692182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2735 423 CDD PIN_FEN1 4 338 - -
Mch6g2735 423 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Mch6g2735 423 Gene3D - 229 292 - -
Mch6g2735 423 SMART HhH_4 227 260 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Mch6g2735 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Mch6g2735 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 230 245 IPR006084 -
Mch6g2735 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Mch6g2735 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Mch6g2735 423 Gene3D - 10 228 - -
Mch6g2735 423 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 225 359 IPR036279 -
Mch6g2735 423 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Mch6g2735 423 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Mch6g2735 423 CDD H3TH_FEN1-Euk 228 295 - -
Mch6g2735 423 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Mch6g2735 423 Pfam XPG I-region 150 240 IPR006086 GO:0004518(InterPro)
Mch6g2735 423 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 375 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Mch6g2735 423 SMART xpgineu 147 225 IPR006086 GO:0004518(InterPro)
Mch6g2735 423 FunFam Flap endonuclease 1 225 292 - -
Mch6g2735 423 FunFam Flap endonuclease 1 10 228 - -
Mch6g2735 423 Hamap Flap endonuclease 1 [fen]. 1 353 IPR023426 GO:0016788(InterPro)
Mch6g2735 423 SUPERFAMILY PIN domain-like 2 240 IPR029060 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2735 Mch-Chr6:28928715 Mch8g1543 Mch-Chr8:12021483 2.08E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2735 K04799 - cit:102618340 691.804