Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2744 ATGACGAGGAAGAAGGTGAAGCTGGCCTACATTGCCAATGACTCTGCAAGAAAGGCAACTTTCAAGAAGAGGAAGAGAGGGCTGATGAAGAAGGTCAGCGAACTCAGCACTCTCTGTGGGATTGAGGCTTGTGCAATCGTGTTCAGCCCCTACGATTCTCAACCGGAGCTCTGGCCGTCCCCGCTCGGAGTCCAGCGGGTGCTCTCCCACTTCAAAAAGATGCCCGAGATGGAGAAGAGCAAGAAGATGGTGAACCAAGAAACGTTTCTCCGTCAGAGGATCGCGAAGGCAAACGAGCAGGTTAAGAAGATGAGAAAGGAGAATAGGGAGAAGGAGATGACGCGGCTCATGTTCCAAAGCCTCACCGGAGCCAAGGGGCTTCAGGGTCTCACCATGGTGGACCTCAACGATCTTGGCTGGCTCATTGACCACAACCTCAAGGACATTACCAAGCGGATCGAATCCCTCACCAAGCCTTCACCACCACAGCCACCGCCACCGCCCCCGCCCCAGCCCCAGCCGCATGCGGCAGCGTGGCTGATGGATCTGGTGAGCGTGAGCCCTCATCAGGATCAGGGCATGGGTGGTTTGGGTTTGGGTTTGGTTGGGGAGGACATGCTCCTCCCGTTCGGAGATCATTTTAGTAACCACAATAATAATGCCATGTGGTCCAATGCATTTTTCCCA 687 54.73 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSPLGVQRVLSHFKKMPEMEKSKKMVNQETFLRQRIAKANEQVKKMRKENREKEMTRLMFQSLTGAKGLQGLTMVDLNDLGWLIDHNLKDITKRIESLTKPSPPQPPPPPPPQPQPHAAAWLMDLVSVSPHQDQGMGGLGLGLVGEDMLLPFGDHFSNHNNNAMWSNAFFP 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28984068 28984859 + MC06g2156 Mch6g2744 692191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2744 229 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch6g2744 229 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mch6g2744 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch6g2744 229 Gene3D - 13 119 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch6g2744 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Mch6g2744 229 Coils Coil 87 114 - -
Mch6g2744 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 153 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch6g2744 229 MobiDBLite consensus disorder prediction 158 175 - -
Mch6g2744 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch6g2744 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch6g2744 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch6g2744 229 MobiDBLite consensus disorder prediction 155 175 - -
Mch6g2744 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch6g2744 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0773 Mch-Chr3:11896321 Mch6g2744 Mch-Chr6:28984068 1.73E-76 dispersed
Mch5g1529 Mch-Chr5:16271331 Mch6g2744 Mch-Chr6:28984068 7.46E-42 dispersed
Mch6g2744 Mch-Chr6:28984068 Mch9g0798 Mch-Chr9:5951515 8.13E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43666 PF00319 SRF-TF 6.70E-19 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2744 - - - 0.0