Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2803 ATTTCCCAGGTTTGTGCAGATGTTGAAGATCGGAATTCATGCATTTCAAACATACAACTTGAATTGGAAAGAAGTGGGAGCTCACGGTCGCATCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCGACTCTCAACGAAGCGAGACGAGCCATAGAATCCATAACGAAGTTCAGCACGTTCTCCTTTAGCTACCGTGAAGAAATGGCTATTGAGGACTGCAAGGAGCTTCTTGATTTCTCAGTGTCAGAGCTTGCATGGTCGTTAGCTGAGATGAAGAGGATTCGTGCGGGCGAAAATGAAGCTCCAGACGAAGGGAACCTAAAAGCGTGGCTTAGTGCTGCTCTCAGCAACCAAGACACTTGCCTTGAAGGCTTTGAGGGCACAGATAGACACATCGAAAGCTTCATTAGAGGAAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCACTTTACACTCAATTACACAGCACACCGTTTCGACCCCCTCCAAACAAAACGGCACAGAAAAATGAAAGTTCGGAGTTTCCAGATTGGATGATGGATAGTGAGCAGGAGCTCGTAAAATCTCATCCACATAGTGTTCACGTTGATGCAGTCGTCGCTTTAGATGGAAGCGGAGATTATCGTTCAATTGGAGAAGCTGTAAACGAAGCTCCAAATTATAGTAATAGAAGGTTCATCATATATGTGAAGAAGGGAGTTTACAAAGAGAATGTCGATATGAAGCGAAAGAAAACCAACATAATGTTTATTGGGGATGGTATCGGAGAGACGGTGGTGATGGGAAGTCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTTTCTGGGAAGGGATTCATAGCAAGAGACATGTCATTTCGCAACACGGCTGGACCAGCAAACCATCAGGCAGTGGCTCTCCGTGTCGACTCTGATCAATCAGCCTTCTACCGATGCAGCTTCGAAGGATACCAAGACACGCTTTACGTCCACTCTCTACGCCAATTTTACAGGGAATGCAACATATATGGCACCATAGACTACATCTTCGGCAACGGCGCAGCAGTGTTCCAAAAATGCAACATCTACACCAGAGTTCCACTCCCTCTCCAGAAGGTCACGATCACCGCGCAAGGCCGGAAATCCCCACATCAGAGCACAGGTTTTTCGATCCAAGACAGCTTTGTTTATGCAACTCAGCCAACTTATCTTGGAAGGCCATGGAAGCTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTCTGGTTCAACCAAGAGGGTGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAATATAAGAACTATGGACCTGGTGCATCCCTGTCGGGGCGGGTCAAGTGGCCCGGGTACCACGATATCCGAGATGCTGCTGTGGCTAGGTTCTTCACCTCCGAGCACTTCATCGATGCCAGATCATGGTTGCCGAGGACGGGTGTCAAGTTCACATTTGGATTG 1506 46.88 ISQVCADVEDRNSCISNIQLELERSGSSRSHPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRAGENEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIESFIRGSLKQVTLLISNVLALYTQLHSTPFRPPPNKTAQKNESSEFPDWMMDSEQELVKSHPHSVHVDAVVALDGSGDYRSIGEAVNEAPNYSNRRFIIYVKKGVYKENVDMKRKKTNIMFIGDGIGETVVMGSRNFLQGWTTFRTATVAVSGKGFIARDMSFRNTAGPANHQAVALRVDSDQSAFYRCSFEGYQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFVYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHDIRDAAVARFFTSEHFIDARSWLPRTGVKFTFGL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29426869 29428594 + MC06g2205 Mch6g2803 692250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2803 502 SUPERFAMILY Pectin lyase-like 199 501 IPR011050 -
Mch6g2803 502 Gene3D - 195 502 IPR012334 -
Mch6g2803 502 FunFam Pectinesterase 194 502 - -
Mch6g2803 502 Pfam Plant invertase/pectin methylesterase inhibitor 1 153 IPR006501 GO:0004857(InterPro)
Mch6g2803 502 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 158 IPR035513 -
Mch6g2803 502 ProSitePatterns Pectinesterase signature 1. 225 244 IPR018040 -
Mch6g2803 502 SMART PMEI_2 1 153 IPR006501 GO:0004857(InterPro)
Mch6g2803 502 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 159 IPR035513 -
Mch6g2803 502 CDD PMEI-like_4 35 157 - -
Mch6g2803 502 NCBIfam pectinesterase inhibitor domain 1 158 IPR006501 GO:0004857(InterPro)
Mch6g2803 502 Pfam Pectinesterase 200 487 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch6g2803 502 PANTHER PECTINESTERASE 1 492 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch6g2803 502 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2803 Mch-Chr6:29426869 Mch9g0697 Mch-Chr9:5247033 5.86E-143 dispersed
Mch6g2803 Mch-Chr6:29426869 Mch6g2804 Mch-Chr6:29431398 4.11E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2803 K01051 - csv:101202977 936.021