Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2804 ATGGGTTATAACGAAGATGATTCTGGAAATCGAAAGCGATACGCCATAATCGGCGTGTCGTCGATGTTGCTGGTGGCGATGGTGGCGGCGGTGACGGTGGGCGTAAACCTCAACCAAACCGAGACGAGCGATCCGGCCACCGGAAGCAAGTCCCACGAAATAACTACCTCCACAAAGGCCATTAAAACCATTTGTGCAACTGTGGATTACAAAGAAGACTGTATGAACAGCCTGAAGTCCGCCGGCCACAACTCGTCGGACCCGAAGGAGTTGATTCAGGCCGGCTTCAACGCCGCCGTGAAACTCCTCCAACAAGCCGCTGACAAGTCGGTCACCTTGAAGGAGATCGAGAAGGACCCAAGAACATCTCAAGCCCTTGCCGGCTGCAAGGAGCTCATGAACTTCGCCATCGACGAGCTTAAATACTCCTTCAAAAGGCTCGGTGACTTCGACATCACGAAACTCGACGAGATGCTCATCGACCTCAAGATCTGGCTCAGTGCCACCATTACTTACCAGGAAACTTGCTTGGATGCATTCGAGAACACAACCGGGAATGCGGCCGAGAAAATGAAGAAGGCGTTGAAGACGTCGATGCATTTGAGCAGCAACGGGCTGGCAATGGTGACGGAGATGTCGTCGATGCTGACGGACCTGCAGATTCCGGGCATCAGCCGCCGTCTCCTCGAGCTTCCAGTTGTGGTCGGGCACGACGACTACCCGGAGTGGGCCAGCCCCGGCTCACGACGGCTCCTTGATGCCTCTCCGGCGAGTATCAAGCCAAACGCGGTGGTGGCCAAGGACGGGAGCGGGAAGTACAGCACCATCCAGGATGCGCTGGACAAAGTTCCAAAGAAAAGGAAGGGCGTCTACGTGATTTACATCAAACAAGGTGTCTACAAGGAATACATTACCGTCAACAAAACTATGACCAAACTTATGTTCATCGGCGACGGCCCCACCAAGACCATTATCACCGGAAACAAGAACTTCGTCGACGGCATTCCCACCTTCAAAACTGCCACCGTTGTGATTACTGCTGAAGACTTCATTGCACGAGACATCGGGATTGAGAACACAGCCGGGCCGGAGAAGCACCAGGCAGTGGCGTTGAGAGTCCAAGCCGACAAGGTGATATTCTATAACTGTGCCATGCATGCATACCAAGACACTCTCTACGTGCACACCATGAGGCAGTTCTACCGTGACTGCGTCGTGTCAGGCACCATCGACTTCGTCTTCGGCGATGCGGCTGCAGTCTTCCAAGGCTGCACGTTCCTCGTCCGCAAGCCGTTGCCGAACCAGCAGTGCATCGTAACAGCCCACGGGCGAAAGGAGCGCCGCCAGCCATCCGCGCTGATAATACAAAAATGCACCATCAAGGCCGACAAGGACCTAGAGCCAGTGAAGAAACAGTACAGATCCTTCTTGGGGCGACCGTGGAAGGAGTACTCAAGGACGCTCATCATGGACTCTTACATTGATAATGTGATCGATCCACAGGGGTGGCTGCCATGGAACGGGGACTGGGGCCTCAAGACATGTTTCTACAGCGAGGTTAACAACAACGGACCCGGGTCCGATAAGTCCAAGAGAGTGAAGTGGCGTGGAATTAAGAACATTACACCACAGCACGCCGCATCTTACACCGCTGGGCGGTTCTTGTTGGGAGATCGTTGGATCAAGCCCACCGGGATCCCCTACATCTCCGGCATGGTCAGCGGTGGCGCCGCTCATTGA 1740 54.54 MGYNEDDSGNRKRYAIIGVSSMLLVAMVAAVTVGVNLNQTETSDPATGSKSHEITTSTKAIKTICATVDYKEDCMNSLKSAGHNSSDPKELIQAGFNAAVKLLQQAADKSVTLKEIEKDPRTSQALAGCKELMNFAIDELKYSFKRLGDFDITKLDEMLIDLKIWLSATITYQETCLDAFENTTGNAAEKMKKALKTSMHLSSNGLAMVTEMSSMLTDLQIPGISRRLLELPVVVGHDDYPEWASPGSRRLLDASPASIKPNAVVAKDGSGKYSTIQDALDKVPKKRKGVYVIYIKQGVYKEYITVNKTMTKLMFIGDGPTKTIITGNKNFVDGIPTFKTATVVITAEDFIARDIGIENTAGPEKHQAVALRVQADKVIFYNCAMHAYQDTLYVHTMRQFYRDCVVSGTIDFVFGDAAAVFQGCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQKCTIKADKDLEPVKKQYRSFLGRPWKEYSRTLIMDSYIDNVIDPQGWLPWNGDWGLKTCFYSEVNNNGPGSDKSKRVKWRGIKNITPQHAASYTAGRFLLGDRWIKPTGIPYISGMVSGGAAH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29431398 29434023 + MC06g2206 Mch6g2804 692251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2804 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Mch6g2804 579 Pfam Plant invertase/pectin methylesterase inhibitor 59 208 IPR006501 GO:0004857(InterPro)
Mch6g2804 579 FunFam Pectinesterase 256 572 - -
Mch6g2804 579 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Mch6g2804 579 NCBIfam pectinesterase inhibitor domain 54 211 IPR006501 GO:0004857(InterPro)
Mch6g2804 579 Gene3D - 256 572 IPR012334 -
Mch6g2804 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 213 IPR035513 -
Mch6g2804 579 PANTHER PECTINESTERASE 13 563 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch6g2804 579 CDD PMEI-like_3 63 214 - -
Mch6g2804 579 SUPERFAMILY Pectin lyase-like 259 571 IPR011050 -
Mch6g2804 579 Pfam Pectinesterase 262 558 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch6g2804 579 SMART PMEI_2 56 208 IPR006501 GO:0004857(InterPro)
Mch6g2804 579 FunFam Pectinesterase 57 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2804 Mch-Chr6:29431398 Mch7g1193 Mch-Chr7:15618878 2.22E-225 dispersed
Mch6g2803 Mch-Chr6:29426869 Mch6g2804 Mch-Chr6:29431398 4.11E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2804 K01051 - csv:101207393 915.605