Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2836 AACAATATGAGGAGTGACATTAAGATAGAAAGGGGGAGGAGAGCTGGAAAGGGGAGGAATAATATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAATTAAGACCTAGGGACGATTTGATTCCATCATCCGAATCACCTTCCGCTTTGGAGAATTCAGCAAGTGAACGCTCTTCGCGGCCTGGTGAGATCGTCAAAAAGCCAGAAATCGGCAATATAGAAGAAGCCGAGTCTTCGCTTCGTGAGAGTGGTTGTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTGCAACAACTAGTAAGATAATGATCTCCATAGCTAGAAGAGGAGAACGCCAAAGAAGACGGTCACAAAATTTTACGACCCCTCCTATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCTTCCTCAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTCGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCGGTCGAGCTGCTTCCAGAACTATGGAAACTAGGTGGTTCTTCTCAAGAAGCGATCCTTTCGTATCGGCGGGCACTTCTTCACCAGTGGAACCTTGATGCAGGAACCATTGCTCAAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGCGGTAGTGAAGCATGCCCTCCGAATCTCCGGTCCCAAATTGACAGCTCATTTGTACCAAGAAACAATATTGAAGAAGCTATACTCTTATTTATAATATTACTTAGAAAATTTGTTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCACCTGTCCTTTGCTCTAACAATATCAGGGGATACAAGAGCTTTGGCAGGTCAAATAGAGGAACTGCCTCCCGGGACTCTACATCGAAAAGAAAGGTACCATACTCTGGCTCTCTGTTATTACGGAGCGGGTGAAGACTTGGCTGCTTTGAATCTGTTGAGGAAACTGTTGGGTAGTCATGAGGATCCTAAATCCGTTCCTGCTTTATTAATGGCATCAAAGATTTGTGGAGAGAACTGCGACCTTGCTGAAGAAGAAATGAGTTTTGCTCGTAGAGCTCTTCAAAACTTGGATGCTGGATGTGATCAATTGGAAAATGTTGCCAATTGTATGTTGGGCGTCTCACTTTCTGTATGTTCTAAATCAGCCGCTGCTGATTCCGAGAGGTCCACCAGACAATCCGAGGCGATACAGGCACTGGAGGCTGCACGGAAAAAGACTAGAATGACCGATCCTAATGTCCTCTACCCTTTGAGTCTAGAATACGCTGACGAGAGGAAGTTAGATTCGGCACTTTATTATGCAAAGCAGTGCCTTAAACTGGAAGGTGGATCTAATGTTAAAACTTGGTTACTACTGGCTAGGATTCTCTCTGCTCAAAAACGATTTGTGGATGGTGAAAGTATCATAAATGCAGCTCTGGATCAGACAGGGAAATGGGATCAAGGCGAACTGCTTCGAACAAAAGCGAAGCTTCTAATTGCACAGGATGAATTGAAAGGTGCTATTGAGACTTATACTCAGTTACTTGCTGTTTTCCAAGTTCAGAGTAAAAGTTTTGGCTCGGGAGATAAGAAGCTACATAAGAGCCGCAGAAACTATGCTAGAAGTTTGCAATTGGAAGTGTGGCATGATTTAGCTCTAGTTTATATAAGGCTCTCACAGTGGCAAGATGCCGAGGCATGCGTTTCGAAGTCGGAGGCCATCTGTTCTTATTCAGCTTCTAGATGTCATATCACTGGTGTGCTTTATGAAGCAAAAGGCTTGTACAAAGAAGCTCTGAAAGCTTTTGTGGCTGCTCTGGACATCGATCCCATCCATGTCCCGAGCTTGGTTTCGTCTGCCATGGTTATCAAACAACTCGGCCACGGATCGCATCCCGTTATACGAAGCTTTTTGATGGATGCTCTACGGCTCGACCAGACGAACCATGCAGCATGGTACAATCTTGGGCTATTCTACAAATCTGAAGGTACCAAGTCATCGTTGGCAGAAGCTGTTGAGTGTTTTGAGGCTGCAACTTTTCTTGAAGAGACTGCTCCTGTTGAACCCTTTAGATAA 2217 43.57 NNMRSDIKIERGRRAGKGRNNIRKIMKCLCSGEKLRPRDDLIPSSESPSALENSASERSSRPGEIVKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITATTSKIMISIARRGERQRRRSQNFTTPPMSMHAVSLLLEAIFLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLGGSSQEAILSYRRALLHQWNLDAGTIAQIQKEFAIFLLYSGSEACPPNLRSQIDSSFVPRNNIEEAILLFIILLRKFVLKRIDWDPSILDHLSFALTISGDTRALAGQIEELPPGTLHRKERYHTLALCYYGAGEDLAALNLLRKLLGSHEDPKSVPALLMASKICGENCDLAEEEMSFARRALQNLDAGCDQLENVANCMLGVSLSVCSKSAAADSERSTRQSEAIQALEAARKKTRMTDPNVLYPLSLEYADERKLDSALYYAKQCLKLEGGSNVKTWLLLARILSAQKRFVDGESIINAALDQTGKWDQGELLRTKAKLLIAQDELKGAIETYTQLLAVFQVQSKSFGSGDKKLHKSRRNYARSLQLEVWHDLALVYIRLSQWQDAEACVSKSEAICSYSASRCHITGVLYEAKGLYKEALKAFVAALDIDPIHVPSLVSSAMVIKQLGHGSHPVIRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEETAPVEPFR 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29647254 29650843 + MC06g2234 Mch6g2836 692283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2836 738 SUPERFAMILY TPR-like 535 710 IPR011990 GO:0005515(InterPro)
Mch6g2836 738 MobiDBLite consensus disorder prediction 39 71 - -
Mch6g2836 738 SMART tpr_5 499 532 IPR019734 GO:0005515(InterPro)
Mch6g2836 738 SMART tpr_5 157 190 IPR019734 GO:0005515(InterPro)
Mch6g2836 738 SMART tpr_5 696 732 IPR019734 GO:0005515(InterPro)
Mch6g2836 738 SMART tpr_5 626 659 IPR019734 GO:0005515(InterPro)
Mch6g2836 738 SMART tpr_5 592 625 IPR019734 GO:0005515(InterPro)
Mch6g2836 738 SMART tpr_5 535 568 IPR019734 GO:0005515(InterPro)
Mch6g2836 738 SMART tpr_5 464 497 IPR019734 GO:0005515(InterPro)
Mch6g2836 738 SUPERFAMILY TPR-like 444 564 IPR011990 GO:0005515(InterPro)
Mch6g2836 738 PANTHER PROTEIN NPG1 19 738 IPR043376 -
Mch6g2836 738 MobiDBLite consensus disorder prediction 46 60 - -
Mch6g2836 738 Gene3D Tetratricopeptide repeat domain 533 732 IPR011990 GO:0005515(InterPro)
Mch6g2836 738 Gene3D Tetratricopeptide repeat domain 339 532 IPR011990 GO:0005515(InterPro)
Mch6g2836 738 ProSiteProfiles TPR repeat profile. 626 659 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0920 Mch-Chr11:6281008 Mch6g2836 Mch-Chr6:29647254 7.41E-192 transposed
Mch8g0631 Mch-Chr8:4528230 Mch6g2836 Mch-Chr6:29647254 2.49E-182 transposed
Mch5g0116 Mch-Chr5:733447 Mch6g2836 Mch-Chr6:29647254 1.57E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2836 K21843 - csv:101223229 1225.31