Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2872 AGGCATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCATATGAAAGTTTCATATCACTCGATTCATCAGCCTAGATGTGGGGTTTGTGGAAAGCACTGCAAATCATTTGAATCACTGAGGGAACATCTGCAGGGTCCTCTTTCAAAATCAAATTGTTCAAAAATTTTCATAGAGCAAGGCTGTGGGCTTTGTTTGAGAGTACTTGATGGCCGCAGATCTCTCAATGAGCACCGTGACATTTGCTGCCTAACAGCACCCGTTCACCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGATCGTTCTGATCGAGTCCTTGGAGCAATAGCTATGGATTGTGTCATGGCTGGCGGTGGAAGTGATGGCACATTGGACCTTTGCGTTGGGGTGTGCCTTGTTGATGAAGAAGAGAAATTGATTTTCAATACTTTCGTACGACCACAAATACCAATCACAAATTACAGGCATGAAGTAACTGGGCTAACGGAAGAACATATGAGGTATGCCATGCCTTTGAAAGAAGTCCAAGAAAAAGTACTACGAATCTTGATAAATGGAGAGTCCATTGGGAGATTGAGATTAAATGGTGGTAGAGCTAGGCTTCTTGTCGGCCATGATTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCAAGATATCATCCATTGATGAAGACGAATTTGGTTAGCCATTCCCTCAAGTACCTTACTCGAACATATTTGGGGTATGATATTCAGCAGGGTGTGCATGATCCGTATGAAAATTGTGTATCAGTGATGCGGTTGTACAAGAGAATGCGTAATCTTGATCATCATGGACAAGTTATGATACCAACGGTTGCTCCTCATACTCAGTATGTTGCTCACAATCTTGATTCCCATAGTGTGAAAGATCTTGAGAAGATGACTCCAGATAAACTTTATGAGATGTCCAGGTCAAACTTTAAGTGTTGGTGTCTTGATTCACGGCGAGTAATGCAGACTTAG 1050 41.14 RHKCSACYKQYKKKEHLIEHMKVSYHSIHQPRCGVCGKHCKSFESLREHLQGPLSKSNCSKIFIEQGCGLCLRVLDGRRSLNEHRDICCLTAPVHQGTSLLPTDLSDCYDEDRSDRVLGAIAMDCVMAGGGSDGTLDLCVGVCLVDEEEKLIFNTFVRPQIPITNYRHEVTGLTEEHMRYAMPLKEVQEKVLRILINGESIGRLRLNGGRARLLVGHDLEHDLDCLRMNYPDHMLRDTARYHPLMKTNLVSHSLKYLTRTYLGYDIQQGVHDPYENCVSVMRLYKRMRNLDHHGQVMIPTVAPHTQYVAHNLDSHSVKDLEKMTPDKLYEMSRSNFKCWCLDSRRVMQT 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29850207 29853897 - MC06g2263 Mch6g2872 692319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2872 349 CDD REX4_like 121 285 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Mch6g2872 349 Gene3D - 119 311 IPR036397 GO:0003676(InterPro)
Mch6g2872 349 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 2 343 IPR047021 GO:0004527(PANTHER)|GO:0004527(InterPro)|GO:0005634(PANTHER)
Mch6g2872 349 SMART exoiiiendus 119 293 IPR013520 -
Mch6g2872 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 2 31 IPR013087 -
Mch6g2872 349 ProSitePatterns Zinc finger C2H2 type domain signature. 4 26 IPR013087 -
Mch6g2872 349 SUPERFAMILY Ribonuclease H-like 121 289 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0247 Mch-Chr1:5518923 Mch6g2872 Mch-Chr6:29850207 6.65E-62 dispersed
Mch4g2226 Mch-Chr4:23871441 Mch6g2872 Mch-Chr6:29850207 2.89E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2872 K18327 - csv:101206525 605.905