Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0067 ATGTATTTGAGACTCGGGGGGATTTGTAATATGGGTGAAGGATCTATGGATGACATAAAAGGAACTAGAGTTACTTTGATCGAGTCATCGTCTTCGAGATTAATGAAGAGGTCGCGTGCTCCCGGGGGTGGAGCCCAAGTCCCTTTGTGTTTGGTTGATGGATGCAGTTCAGACCTTAGCAAATGCAGGGACTACCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAAGAACAACGGTTCTGCCAACAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTCGATGGACACAACCGACGTCGAAGAAAGCCTCAGCCAGCTTCTATGGCACTAAATGCAGGAAGATTTCTCTATGGTAACCAAGGTCCGAGATTCTTGCCATTTGGTAATCAACTACTCCCTGCCAGTGATAATGTCAGCTCTTCTTGGATTGGAGCGATCAAACCCGAGAACAACGCCCCTCTTTGCGGCAGCAATACGCAGTTCGGCTTTGCTGATAGAAGAAAAGATATGTTGCCTGGGTCTCTGGCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTATATCCCTATAGGACTGCTTCCCAAATCATCCAATATCCAGCCATTTCTCGATGTTGGATCGAGCAATGGCGAGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGATTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGGTCCAACCCAACCTCATCCCCCCAGCCCATTTCATCCACAGCGACAGTCTCGGCTTGGAGAGTGACCCCGGGAATTCTGGTTTGGTTTCGGACGGTAGCAGCGATGCAAACATCCGGTGCTACTCGACGTTCCAGATCGGACCTGATGGATCTTCAGTAGATTTATTCAGGTTTTGA 987 47.42 MYLRLGGICNMGEGSMDDIKGTRVTLIESSSSRLMKRSRAPGGGAQVPLCLVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPASMALNAGRFLYGNQGPRFLPFGNQLLPASDNVSSSWIGAIKPENNAPLCGSNTQFGFADRRKDMLPGSLASDYKEKQLAISYIPIGLLPKSSNIQPFLDVGSSNGENVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMVQPNLIPPAHFIHSDSLGLESDPGNSGLVSDGSSDANIRCYSTFQIGPDGSSVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 649973 653075 + MC07g0054 Mch7g0067 692405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0067 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Mch7g0067 328 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
Mch7g0067 328 Gene3D - 41 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch7g0067 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 295 IPR044817 GO:0003677(InterPro)
Mch7g0067 328 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
Mch7g0067 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0067 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1679 Mch-Chr3:18429392 Mch7g0067 Mch-Chr7:649973 3.84E-34 dispersed
Mch6g0049 Mch-Chr6:291451 Mch7g0067 Mch-Chr7:649973 3.22E-59 dispersed
Mch6g0308 Mch-Chr6:2036245 Mch7g0067 Mch-Chr7:649973 2.11E-39 dispersed
Mch7g0067 Mch-Chr7:649973 Mch8g2099 Mch-Chr8:24026372 1.35E-30 dispersed
Mch3g1334 Mch-Chr3:16093399 Mch7g0067 Mch-Chr7:649973 2.00E-56 wgd
Mch7g0067 Mch-Chr7:649973 Mch8g1392 Mch-Chr8:10364197 8.43E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2099 . 179 1015 SBP-box Gene Family AT2G47070 54.8 1.7e-239 825.9
Mch8g2099 . 1 1015 SBP-box Gene Family AT3G60030 53.6 1.0e-278 956.4
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50570 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50570 65.0 1.3e-37 154.1
Mch8g2099 . 179 1015 SBP-box Gene Family AT2G47070 54.8 1.7e-239 825.9
Mch8g2099 . 1 1015 SBP-box Gene Family AT3G60030 53.6 1.0e-278 956.4
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50570 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50570 65.0 1.3e-37 154.1
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50670 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50670 65.0 1.3e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43682 PF03110 SBP 7.40E-29 No_clan Mch TF