Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0069 ATGGGAAGGGGAAGAGTGGAACTGAAGAGAATAGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAACGGAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCCGTTCTTTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACTCTTGAGAGATACCAGAAGTGCAACTATGGAGCACCAGAGCCAAATGTTTCCACAAGAGAGGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTTAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTATTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCACTTGAAAGGCAGCTTGATATGTCACTTAAGCAGATCAGATCAACAAGGACTCAGTACATGTTAGATCAGCTCACCGATCTTCAACGTAAGGAGCATCTTCTTAACGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGATATCAAGTAAATGCTCTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTCCAACTGATGCCTTCTTCCATCCCTTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTTCTCCCAGGATGGTTGCCT 726 44.49 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYFKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPTDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 694265 702111 + MC07g0055 Mch7g0069 692407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0069 242 Coils Coil 126 146 - -
Mch7g0069 242 FunFam MADS-box transcription factor 7 13 98 - -
Mch7g0069 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch7g0069 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch7g0069 242 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch7g0069 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch7g0069 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0069 242 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0069 Mch-Chr7:694265 Mch8g2368 Mch-Chr8:26794936 2.16E-101 dispersed
Mch7g0069 Mch-Chr7:694265 Mch7g0070 Mch-Chr7:733753 1.33E-11 tandem
Mch7g0132 Mch-Chr7:1636487 Mch7g0069 Mch-Chr7:694265 5.11E-09 transposed
Mch7g0502 Mch-Chr7:8257290 Mch7g0069 Mch-Chr7:694265 5.92E-08 transposed
Mch3g1336 Mch-Chr3:16103460 Mch7g0069 Mch-Chr7:694265 7.41E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43683 PF01486 K-box 2.40E-26 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0069 - - - 0.0