Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0078 GTCTTAAATCTCTCTATCCAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTTCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTTCTTTGTTGTGAAACACCTCCACACCTTCCTGGGAAGGTAGCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTTGAGTATCAAGCTAAAACGAGTGTGTGCAATCATTGCCAATCACATTCAGGTGGAGCTCTGAAGAGCCCAGAGGAGTTGTTATTACTTGTCAGACTTGTGCAAATGCTGCTCTCTGACTCATCAATCCAGAAATCTGACAAGGTAGGTTCTGAAGTTAGGAGCAATAACTTGAAAGCGGATGATGATCAATGGAGTTCTATGATAGAGTCTCTTCTAGTTGGCAGTGGAACTCCTTCCAGTACCATTGATTGGCTTCTTCGAGAGCTGCTAAAAGACAAATTTCATCTCTGGCTTTCTTCCCGATTGGAAGATAGACATGATCCTGCGGGCTGTTCCTTGTCCAAGAAAGATCAGGGCATTATACACATGATTGCTGGCTTGGGATATGTGTGGGCATTAAACCCAATCCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCGGCACGCTTTGGAAGGGAAAAAATGGTTGCTGCACTAGTAGCATCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGATCCGGCTGGTAAAACGGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGGTGAGCATCCCAAAGGCTCTGCCGAGGTTGAAGCAGAAATGACAGTAAATAGCATCTCAAAGGGGGACCTCTCTTCCTCTGAGGACTATATGCCACTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCAGATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGTTTTTGCAGCTTGTATAGATGAGTATGGAGTTGATCCAAATGACATACATGGGCTCTTTGCTATGTCAAAGTTAAACTTCTGTAATCGACGGGATTACAATGCAGCTGCATTATCTATACAAAAGAAGTATAGAGGCTGGAAAGGACGTAAAGAGTTTTTATCAATTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCACTACAAAATAATTTGTTGGGCTGTTGGAATCCTTGATAAAGTTGTACTACGTTGGAGAAGGAAAGGAGCTGGTTTGAGAGGTTTTCGTAGCGAGGTAGGATCTATTGATGAGAGTGAAGACGACGATATTATAAAGGTGTTCCGTAAACAAAAAGTGGAAGGAACTATTGGCGAGGCTGTTTCACGAGTGCTGTCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTT 1551 43.78 VLNLSIQVIIIGSFLCDPSESSWACMFGDIEVPLQIVQNGVLCCETPPHLPGKVAFCITSGNREPCSEVREFEYQAKTSVCNHCQSHSGGALKSPEELLLLVRLVQMLLSDSSIQKSDKVGSEVRSNNLKADDDQWSSMIESLLVGSGTPSSTIDWLLRELLKDKFHLWLSSRLEDRHDPAGCSLSKKDQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALVASGASAGAVTDPSSQDPAGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEGEHPKGSAEVEAEMTVNSISKGDLSSSEDYMPLKNTLAAVRNAAQAAAQIQSAFRAHSFRKRQQKEAVFAACIDEYGVDPNDIHGLFAMSKLNFCNRRDYNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGAGLRGFRSEVGSIDESEDDDIIKVFRKQKVEGTIGEAVSRVLSMVDSPDARQQYHRML 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 825849 828342 + MC07g0062 Mch7g0078 692416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0078 517 Gene3D - 102 286 IPR036770 -
Mch7g0078 517 SUPERFAMILY Ankyrin repeat 189 282 IPR036770 -
Mch7g0078 517 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 516 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Mch7g0078 517 ProSiteProfiles IQ motif profile. 395 424 - -
Mch7g0078 517 Gene3D Immunoglobulins 3 80 IPR013783 -
Mch7g0078 517 ProSiteProfiles Ankyrin repeat region circular profile. 221 247 - -
Mch7g0078 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 446 IPR027417 -
Mch7g0078 517 FunFam Calmodulin-binding transcription activator 2 394 442 - -
Mch7g0078 517 Pfam Ankyrin repeats (3 copies) 194 281 IPR002110 GO:0005515(InterPro)
Mch7g0078 517 SUPERFAMILY E set domains 7 74 IPR014756 -
Mch7g0078 517 ProSiteProfiles IQ motif profile. 418 442 - -
Mch7g0078 517 ProSiteProfiles IQ motif profile. 338 366 - -
Mch7g0078 517 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515(InterPro)
Mch7g0078 517 Pfam IQ calmodulin-binding motif 397 415 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 Pfam IQ calmodulin-binding motif 420 439 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 CDD IPT 7 74 - -
Mch7g0078 517 Gene3D - 394 442 - -
Mch7g0078 517 SMART iq_5 337 359 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 SMART iq_5 417 439 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 SMART iq_5 394 416 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 SMART ANK_2a 221 250 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0078 K21596 - - csv:101222798 844.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0798 Mch-Chr5:5541762 Mch7g0078 Mch-Chr7:825849 3.67E-82 dispersed
Mch7g0078 Mch-Chr7:825849 Mch7g1223 Mch-Chr7:15842323 6.62E-78 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch7g0078 . 3 517 CAMTA Transcription Factor Family AT1G67310 63.8 1.2e-179 627.5
Mch7g1223 . 34 911 CAMTA Transcription Factor Family AT3G16940 55.5 4.7e-264 907.5
Mch7g1223 . 11 632 CAMTA Transcription Factor Family AT4G16150 53.7 2.3e-195 679.5
Mch7g0078 . 3 517 CAMTA Transcription Factor Family AT1G67310 63.8 1.2e-179 627.5
Mch7g1223 . 11 632 CAMTA Transcription Factor Family AT4G16150 53.7 2.3e-195 679.5
Mch7g1223 . 34 911 CAMTA Transcription Factor Family AT3G16940 55.5 4.7e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43