Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch7g0078 | GTCTTAAATCTCTCTATCCAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTTCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTTCTTTGTTGTGAAACACCTCCACACCTTCCTGGGAAGGTAGCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTTGAGTATCAAGCTAAAACGAGTGTGTGCAATCATTGCCAATCACATTCAGGTGGAGCTCTGAAGAGCCCAGAGGAGTTGTTATTACTTGTCAGACTTGTGCAAATGCTGCTCTCTGACTCATCAATCCAGAAATCTGACAAGGTAGGTTCTGAAGTTAGGAGCAATAACTTGAAAGCGGATGATGATCAATGGAGTTCTATGATAGAGTCTCTTCTAGTTGGCAGTGGAACTCCTTCCAGTACCATTGATTGGCTTCTTCGAGAGCTGCTAAAAGACAAATTTCATCTCTGGCTTTCTTCCCGATTGGAAGATAGACATGATCCTGCGGGCTGTTCCTTGTCCAAGAAAGATCAGGGCATTATACACATGATTGCTGGCTTGGGATATGTGTGGGCATTAAACCCAATCCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCGGCACGCTTTGGAAGGGAAAAAATGGTTGCTGCACTAGTAGCATCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGATCCGGCTGGTAAAACGGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGGTGAGCATCCCAAAGGCTCTGCCGAGGTTGAAGCAGAAATGACAGTAAATAGCATCTCAAAGGGGGACCTCTCTTCCTCTGAGGACTATATGCCACTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCAGATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGTTTTTGCAGCTTGTATAGATGAGTATGGAGTTGATCCAAATGACATACATGGGCTCTTTGCTATGTCAAAGTTAAACTTCTGTAATCGACGGGATTACAATGCAGCTGCATTATCTATACAAAAGAAGTATAGAGGCTGGAAAGGACGTAAAGAGTTTTTATCAATTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCACTACAAAATAATTTGTTGGGCTGTTGGAATCCTTGATAAAGTTGTACTACGTTGGAGAAGGAAAGGAGCTGGTTTGAGAGGTTTTCGTAGCGAGGTAGGATCTATTGATGAGAGTGAAGACGACGATATTATAAAGGTGTTCCGTAAACAAAAAGTGGAAGGAACTATTGGCGAGGCTGTTTCACGAGTGCTGTCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTT | 1551 | 43.78 | VLNLSIQVIIIGSFLCDPSESSWACMFGDIEVPLQIVQNGVLCCETPPHLPGKVAFCITSGNREPCSEVREFEYQAKTSVCNHCQSHSGGALKSPEELLLLVRLVQMLLSDSSIQKSDKVGSEVRSNNLKADDDQWSSMIESLLVGSGTPSSTIDWLLRELLKDKFHLWLSSRLEDRHDPAGCSLSKKDQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALVASGASAGAVTDPSSQDPAGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEGEHPKGSAEVEAEMTVNSISKGDLSSSEDYMPLKNTLAAVRNAAQAAAQIQSAFRAHSFRKRQQKEAVFAACIDEYGVDPNDIHGLFAMSKLNFCNRRDYNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGAGLRGFRSEVGSIDESEDDDIIKVFRKQKVEGTIGEAVSRVLSMVDSPDARQQYHRML | 517 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 825849 | 828342 | + | MC07g0062 | Mch7g0078 | 692416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch7g0078 | 517 | Gene3D | - | 102 | 286 | IPR036770 | - | |
| Mch7g0078 | 517 | SUPERFAMILY | Ankyrin repeat | 189 | 282 | IPR036770 | - | |
| Mch7g0078 | 517 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 6 | 516 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Mch7g0078 | 517 | ProSiteProfiles | IQ motif profile. | 395 | 424 | - | - | |
| Mch7g0078 | 517 | Gene3D | Immunoglobulins | 3 | 80 | IPR013783 | - | |
| Mch7g0078 | 517 | ProSiteProfiles | Ankyrin repeat region circular profile. | 221 | 247 | - | - | |
| Mch7g0078 | 517 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 345 | 446 | IPR027417 | - | |
| Mch7g0078 | 517 | FunFam | Calmodulin-binding transcription activator 2 | 394 | 442 | - | - | |
| Mch7g0078 | 517 | Pfam | Ankyrin repeats (3 copies) | 194 | 281 | IPR002110 | GO:0005515(InterPro) | |
| Mch7g0078 | 517 | SUPERFAMILY | E set domains | 7 | 74 | IPR014756 | - | |
| Mch7g0078 | 517 | ProSiteProfiles | IQ motif profile. | 418 | 442 | - | - | |
| Mch7g0078 | 517 | ProSiteProfiles | IQ motif profile. | 338 | 366 | - | - | |
| Mch7g0078 | 517 | ProSiteProfiles | Ankyrin repeat profile. | 221 | 253 | IPR002110 | GO:0005515(InterPro) | |
| Mch7g0078 | 517 | Pfam | IQ calmodulin-binding motif | 397 | 415 | IPR000048 | GO:0005515(InterPro) | |
| Mch7g0078 | 517 | Pfam | IQ calmodulin-binding motif | 420 | 439 | IPR000048 | GO:0005515(InterPro) | |
| Mch7g0078 | 517 | CDD | IPT | 7 | 74 | - | - | |
| Mch7g0078 | 517 | Gene3D | - | 394 | 442 | - | - | |
| Mch7g0078 | 517 | SMART | iq_5 | 337 | 359 | IPR000048 | GO:0005515(InterPro) | |
| Mch7g0078 | 517 | SMART | iq_5 | 417 | 439 | IPR000048 | GO:0005515(InterPro) | |
| Mch7g0078 | 517 | SMART | iq_5 | 394 | 416 | IPR000048 | GO:0005515(InterPro) | |
| Mch7g0078 | 517 | SMART | ANK_2a | 221 | 250 | IPR002110 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g0798 | Mch-Chr5:5541762 | Mch7g0078 | Mch-Chr7:825849 | 3.67E-82 | dispersed | |
| Mch7g0078 | Mch-Chr7:825849 | Mch7g1223 | Mch-Chr7:15842323 | 6.62E-78 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch7g0078 | K21596 | - | csv:101222798 | 844.343 |