Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0078 GTCTTAAATCTCTCTATCCAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTTCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTTCTTTGTTGTGAAACACCTCCACACCTTCCTGGGAAGGTAGCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTTGAGTATCAAGCTAAAACGAGTGTGTGCAATCATTGCCAATCACATTCAGGTGGAGCTCTGAAGAGCCCAGAGGAGTTGTTATTACTTGTCAGACTTGTGCAAATGCTGCTCTCTGACTCATCAATCCAGAAATCTGACAAGGTAGGTTCTGAAGTTAGGAGCAATAACTTGAAAGCGGATGATGATCAATGGAGTTCTATGATAGAGTCTCTTCTAGTTGGCAGTGGAACTCCTTCCAGTACCATTGATTGGCTTCTTCGAGAGCTGCTAAAAGACAAATTTCATCTCTGGCTTTCTTCCCGATTGGAAGATAGACATGATCCTGCGGGCTGTTCCTTGTCCAAGAAAGATCAGGGCATTATACACATGATTGCTGGCTTGGGATATGTGTGGGCATTAAACCCAATCCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCGGCACGCTTTGGAAGGGAAAAAATGGTTGCTGCACTAGTAGCATCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGATCCGGCTGGTAAAACGGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGGTGAGCATCCCAAAGGCTCTGCCGAGGTTGAAGCAGAAATGACAGTAAATAGCATCTCAAAGGGGGACCTCTCTTCCTCTGAGGACTATATGCCACTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCAGATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGTTTTTGCAGCTTGTATAGATGAGTATGGAGTTGATCCAAATGACATACATGGGCTCTTTGCTATGTCAAAGTTAAACTTCTGTAATCGACGGGATTACAATGCAGCTGCATTATCTATACAAAAGAAGTATAGAGGCTGGAAAGGACGTAAAGAGTTTTTATCAATTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCACTACAAAATAATTTGTTGGGCTGTTGGAATCCTTGATAAAGTTGTACTACGTTGGAGAAGGAAAGGAGCTGGTTTGAGAGGTTTTCGTAGCGAGGTAGGATCTATTGATGAGAGTGAAGACGACGATATTATAAAGGTGTTCCGTAAACAAAAAGTGGAAGGAACTATTGGCGAGGCTGTTTCACGAGTGCTGTCCATGGTTGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTT 1551 43.78 VLNLSIQVIIIGSFLCDPSESSWACMFGDIEVPLQIVQNGVLCCETPPHLPGKVAFCITSGNREPCSEVREFEYQAKTSVCNHCQSHSGGALKSPEELLLLVRLVQMLLSDSSIQKSDKVGSEVRSNNLKADDDQWSSMIESLLVGSGTPSSTIDWLLRELLKDKFHLWLSSRLEDRHDPAGCSLSKKDQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALVASGASAGAVTDPSSQDPAGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEGEHPKGSAEVEAEMTVNSISKGDLSSSEDYMPLKNTLAAVRNAAQAAAQIQSAFRAHSFRKRQQKEAVFAACIDEYGVDPNDIHGLFAMSKLNFCNRRDYNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGAGLRGFRSEVGSIDESEDDDIIKVFRKQKVEGTIGEAVSRVLSMVDSPDARQQYHRML 517
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 825849 828342 + MC07g0062 Mch7g0078 692416
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0078 517 Gene3D - 102 286 IPR036770 -
Mch7g0078 517 SUPERFAMILY Ankyrin repeat 189 282 IPR036770 -
Mch7g0078 517 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 516 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Mch7g0078 517 ProSiteProfiles IQ motif profile. 395 424 - -
Mch7g0078 517 Gene3D Immunoglobulins 3 80 IPR013783 -
Mch7g0078 517 ProSiteProfiles Ankyrin repeat region circular profile. 221 247 - -
Mch7g0078 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 446 IPR027417 -
Mch7g0078 517 FunFam Calmodulin-binding transcription activator 2 394 442 - -
Mch7g0078 517 Pfam Ankyrin repeats (3 copies) 194 281 IPR002110 GO:0005515(InterPro)
Mch7g0078 517 SUPERFAMILY E set domains 7 74 IPR014756 -
Mch7g0078 517 ProSiteProfiles IQ motif profile. 418 442 - -
Mch7g0078 517 ProSiteProfiles IQ motif profile. 338 366 - -
Mch7g0078 517 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515(InterPro)
Mch7g0078 517 Pfam IQ calmodulin-binding motif 397 415 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 Pfam IQ calmodulin-binding motif 420 439 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 CDD IPT 7 74 - -
Mch7g0078 517 Gene3D - 394 442 - -
Mch7g0078 517 SMART iq_5 337 359 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 SMART iq_5 417 439 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 SMART iq_5 394 416 IPR000048 GO:0005515(InterPro)
Mch7g0078 517 SMART ANK_2a 221 250 IPR002110 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0798 Mch-Chr5:5541762 Mch7g0078 Mch-Chr7:825849 3.67E-82 dispersed
Mch7g0078 Mch-Chr7:825849 Mch7g1223 Mch-Chr7:15842323 6.62E-78 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0078 K21596 - csv:101222798 844.343