Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0083 GAATTTGAGAAAAGAAACAAGAAAGAAAAGAACAAAGGAGGAGTTGGAAAATTAAGGAATGGAGAGTCCAATTCCCTCATTCCCCTCTTTAGGGAGCCAAGTAGTGTTGAGAAGATCTTCTTGGATTTTGAGAGGGAGCAACAAAGAGTAGCATTTAGGCCTTCCTCACCACCAACCCCTCCCTTTGTTACTCCCAGAAATGCTTCTCCAAGGGCTATTTCTCCGAGAACCTCCTCCGCTCGACGACCCTCCTTGCCCATCTCTCCTCCCAGAGCTCTTTCTCCGAGGGTCGTAAACCGCCCTAAGGGGTTTCGCTTTCGACCTGAGCCGACTCTTCGGAACCACCATGCTTCTGCAACAAAGATTCAAGCAGCATATAGAGGTTATGTGGCGAGGAGGAGCTTTAGAGCACTAAAGGGGCTGATGAGACTTCAAGGAGTGGTGAGAGGGCAGAACGTGAAGCGGCAGACGGCGAACGCAATGAAGCAGATGCAGCTGTTGGTGAGGGTTCAGTCTCAGATTCAGTCACGTCGAATTCAGATGCTCGACATTCAGCCTCGCCACCAGAATCAGGATGCCGATAATGCCTTGGGCAAATGGAGCTTCACTCAACCTTCTGAGGCAGGTAATCAAGAAGATTGGGATGATAGCTTGCTAACAAGAGAGGAAATAGAAGCAAGATTGCAAAGAAAAGCTGAGGCTATAATCAAGAGAGAGCGAGCAATGGCTTATGCATATTCTCATCAGTTGTGGAAGGCCAGTCCAAACTCAGCTCAAGCTGTTATGGCAGATCTTAGATCCGCAGGATTTCCATGGTGGTGGAATTGGTTAGAGCGTCAATTGCCTCCCTCAAATGTTCCTTCTGAACCTCAAACTCTCAAAAATTTCCTACTTGCACCTCCAACTCCACAACCAAAGCAAACCCCAAGCAACAACAACATGGATCAAACTCTCACACCAAAGTCTACGAAATCGACCATCCTCCCAACGACGAAACCCTCGCGAAACTCACCAGCATTCCGAACCCCTCCCCCCGCGTTTCGAACCCCGCCCGCCAGCTCGAGATATTCAAGGCCAAGAGGCAATGGAATCGATTCACCATTCGACGTGCCGCTAAAGGACGATGATAGCCTCACAAGTTGCCCTCCTTTCTCGGTCCCGCACTACATGGCTCCCACGGTCTCGGCCAAGGCCAAGCTAAGAGGCAGTAGCACCCCGAAAGAGCGGTTCGTCGTCGTGACCCCGACCAGCGAGTCGAAAAGGAGGATATCATTCCCTTTCACACAAGGGTTGGGATCTTTCAAGTGGAACAAAGGCAACTTGTTCTCAAACAAGGATTCAAGCTCTCAAAGGGTTTTGGACAAGAATCAATCCTTGCAATCTGCGGGCAATTTGAGTGTGGATTCTACTGTTTCCTTGCCTGCTGGGGTTGGAAGGAAGCCATTTAACAGATTTGTG 1458 49.52 EFEKRNKKEKNKGGVGKLRNGESNSLIPLFREPSSVEKIFLDFEREQQRVAFRPSSPPTPPFVTPRNASPRAISPRTSSARRPSLPISPPRALSPRVVNRPKGFRFRPEPTLRNHHASATKIQAAYRGYVARRSFRALKGLMRLQGVVRGQNVKRQTANAMKQMQLLVRVQSQIQSRRIQMLDIQPRHQNQDADNALGKWSFTQPSEAGNQEDWDDSLLTREEIEARLQRKAEAIIKRERAMAYAYSHQLWKASPNSAQAVMADLRSAGFPWWWNWLERQLPPSNVPSEPQTLKNFLLAPPTPQPKQTPSNNNMDQTLTPKSTKSTILPTTKPSRNSPAFRTPPPAFRTPPASSRYSRPRGNGIDSPFDVPLKDDDSLTSCPPFSVPHYMAPTVSAKAKLRGSSTPKERFVVVTPTSESKRRISFPFTQGLGSFKWNKGNLFSNKDSSSQRVLDKNQSLQSAGNLSVDSTVSLPAGVGRKPFNRFV 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 896691 898578 - MC07g0067 Mch7g0083 692421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0083 486 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515(InterPro)
Mch7g0083 486 PANTHER IQ-DOMAIN 5-RELATED 84 430 - -
Mch7g0083 486 MobiDBLite consensus disorder prediction 285 364 - -
Mch7g0083 486 MobiDBLite consensus disorder prediction 308 337 - -
Mch7g0083 486 MobiDBLite consensus disorder prediction 1 16 - -
Mch7g0083 486 ProSiteProfiles IQ motif profile. 115 143 - -
Mch7g0083 486 MobiDBLite consensus disorder prediction 50 97 - -
Mch7g0083 486 MobiDBLite consensus disorder prediction 1 28 - -
Mch7g0083 486 Pfam Protein of unknown function (DUF4005) 362 430 IPR025064 -
Mch7g0083 486 Gene3D - 100 135 - -
Mch7g0083 486 SMART iq_5 114 136 IPR000048 GO:0005515(InterPro)
Mch7g0083 486 MobiDBLite consensus disorder prediction 70 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0083 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1577 Mch-Chr4:19064676 Mch7g0083 Mch-Chr7:896691 1.05E-21 dispersed
Mch5g0018 Mch-Chr5:147548 Mch7g0083 Mch-Chr7:896691 4.35E-20 dispersed
Mch7g0083 Mch-Chr7:896691 Mch9g1765 Mch-Chr9:19578536 1.46E-18 dispersed
Mch7g0083 Mch-Chr7:896691 Mch4g2077 Mch-Chr4:22941834 6.42E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011147 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31