Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch7g0133 | ATGAAAATACAGTGTGATGTTTGCGAGAAGGCTCCTGCTACTGTGATTTGTTGTGCGGATGAGGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCCAATAAGCTGGCGAGTAAACATCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGACAAGGCGGCTTTCATCTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCAACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCTCGAAGGACGTCGACAAGGTCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCTTCTGACAAGCAGAAAGAGCATCTCGAGTTCGGAGAGCTAGAATGGCTAGCAGAAATGGGTCTCTTCGGTGAGCAGGTTCCGCAAGAAGCTTTAGCAGCTGCGGAAGTTCCTGAGATTCGGACTTCACACTCGGGTAGTGCAATCTCATACAGACCTACAAAGTCGAGCACGTCGTACAAAAAGCCTAGGATCGAGATGCCAGACGAGGAGGAGTTTTTCACTGTCCCTGATCTTGGATGA | 714 | 48.18 | MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCSKDVDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEHLEFGELEWLAEMGLFGEQVPQEALAAAEVPEIRTSHSGSAISYRPTKSSTSYKKPRIEMPDEEEFFTVPDLG | 237 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1637820 | 1640930 | + | MC07g0091 | Mch7g0133 | 692471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch7g0133 | 237 | CDD | Bbox1_BBX-like | 56 | 98 | IPR049808 | - | |
| Mch7g0133 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
| Mch7g0133 | 237 | Gene3D | Classic Zinc Finger | 1 | 93 | - | - | |
| Mch7g0133 | 237 | MobiDBLite | consensus disorder prediction | 201 | 218 | - | - | |
| Mch7g0133 | 237 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
| Mch7g0133 | 237 | MobiDBLite | consensus disorder prediction | 114 | 136 | - | - | |
| Mch7g0133 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Mch7g0133 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 236 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
| Mch7g0133 | 237 | MobiDBLite | consensus disorder prediction | 201 | 220 | - | - | |
| Mch7g0133 | 237 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
| Mch7g0133 | 237 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| Mch7g0133 | 237 | Pfam | B-box zinc finger | 3 | 45 | IPR000315 | GO:0008270(InterPro) | |
| Mch7g0133 | 237 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g1031 | Mch-Chr10:7504337 | Mch7g0133 | Mch-Chr7:1637820 | 1.45E-41 | dispersed | |
| Mch1g1566 | Mch-Chr1:16894983 | Mch7g0133 | Mch-Chr7:1637820 | 2.49E-21 | dispersed | |
| Mch2g1076 | Mch-Chr2:7253384 | Mch7g0133 | Mch-Chr7:1637820 | 6.35E-34 | dispersed | |
| Mch4g0563 | Mch-Chr4:3576947 | Mch7g0133 | Mch-Chr7:1637820 | 1.20E-35 | dispersed | |
| Mch7g0133 | Mch-Chr7:1637820 | Mch8g0821 | Mch-Chr8:5837414 | 5.19E-35 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43689 | PF00643 | zf-B_box | 6.70E-08 | No_clan | Mch | TF |
Pathway information