Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0133 ATGAAAATACAGTGTGATGTTTGCGAGAAGGCTCCTGCTACTGTGATTTGTTGTGCGGATGAGGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCCAATAAGCTGGCGAGTAAACATCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGACAAGGCGGCTTTCATCTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCAACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCTCGAAGGACGTCGACAAGGTCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCTTCTGACAAGCAGAAAGAGCATCTCGAGTTCGGAGAGCTAGAATGGCTAGCAGAAATGGGTCTCTTCGGTGAGCAGGTTCCGCAAGAAGCTTTAGCAGCTGCGGAAGTTCCTGAGATTCGGACTTCACACTCGGGTAGTGCAATCTCATACAGACCTACAAAGTCGAGCACGTCGTACAAAAAGCCTAGGATCGAGATGCCAGACGAGGAGGAGTTTTTCACTGTCCCTGATCTTGGATGA 714 48.18 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCSKDVDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEHLEFGELEWLAEMGLFGEQVPQEALAAAEVPEIRTSHSGSAISYRPTKSSTSYKKPRIEMPDEEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1637820 1640930 + MC07g0091 Mch7g0133 692471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0133 237 CDD Bbox1_BBX-like 56 98 IPR049808 -
Mch7g0133 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Mch7g0133 237 Gene3D Classic Zinc Finger 1 93 - -
Mch7g0133 237 MobiDBLite consensus disorder prediction 201 218 - -
Mch7g0133 237 CDD Bbox1_BBX-like 5 47 IPR049808 -
Mch7g0133 237 MobiDBLite consensus disorder prediction 114 136 - -
Mch7g0133 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch7g0133 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Mch7g0133 237 MobiDBLite consensus disorder prediction 201 220 - -
Mch7g0133 237 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Mch7g0133 237 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch7g0133 237 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Mch7g0133 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0133 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1031 Mch-Chr10:7504337 Mch7g0133 Mch-Chr7:1637820 1.45E-41 dispersed
Mch1g1566 Mch-Chr1:16894983 Mch7g0133 Mch-Chr7:1637820 2.49E-21 dispersed
Mch2g1076 Mch-Chr2:7253384 Mch7g0133 Mch-Chr7:1637820 6.35E-34 dispersed
Mch4g0563 Mch-Chr4:3576947 Mch7g0133 Mch-Chr7:1637820 1.20E-35 dispersed
Mch7g0133 Mch-Chr7:1637820 Mch8g0821 Mch-Chr8:5837414 5.19E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0007 . 1 365 Orphan Transcription Factor Family AT5G61850 67.7 5.8e-125 444.5
Mch7g0133 . 1 167 Orphan Transcription Factor Family AT1G06040 69.0 1.9e-61 232.3
Mch10g1031 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.7e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43689 PF00643 zf-B_box 6.70E-08 No_clan Mch TF