Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0178 ATGCAGCCTTCTGTTTGCGTACACAGAAGAAATCCTCTTCTTAGCTTTCCTCTCTCCCAAAACCAAAAACCAAAACCCCACTCTTCGATTCTCTCTCCTCCTCCACTTTTCCCCTTTCTCTCTCCTCTTTCTTTACCGAACCCCAAAGAATTTGCCATTCCCCAATCGCCAATTTCGACGATTTCCCCATCCGCCATGGATTCTGAGGACGATCTCCATTACTCCACCGACGTCGAATCCCTCGACGATGATTGCGATTTCTACTGCGGCGATATGGACATGGGTATGGGCTACTACAGCGACGACGACGACGATCCTGACGCCGAGGACTTCGTCGAGGACGACACCGATGATTACTTCGACTCCCGCCGCCGCGAGCAAAACTATACCATTCTAAATGAATCAGATATACGGCAGCGCCAAGAGGATGACATTACAAGAATTTCGTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCTGATGAAGCTCGAGTAAGAAAACAAGTTGGCTTGTTGGAAGCACCTGTTTTACATGTCTTGAATGCTAGAGAACGTACTTGTGGAATCTGTTTTGAGTCCTATGCACATAGTAGGATCAAGTCAGCAGCATGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGTTACATTAGCACAGCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTTGATCAAGACATGATCAATTCATTAACCTCAAATGAAGACAGGGACAAATATGCCCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACAAAATGGTGCCCAGCTCCTGGTTGTGATTGTGCTGTTCTCTTTGATGCTGGTAATGGGAACTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAATGTTGGTATCACCAATCTTTTCTATCTTTTTAAAATTATTTTACATATGTATTTAGCTTTTCTTTTGAATCTTCAGTGTACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGGTTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACATGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCAGATCATGGCGAAAGAACTGGTGGCTTTTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGGAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGACAAAAAGCACTAGCAGATTTACATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTACCGGAACAGGAGCATGCCAAGAGACAGTTTTTCGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGACTTCATCAATGCGCTGAAAAGGAACTACTACAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCACACGGAGCGTGCAGCGGCACAACAAGCTCAAAAAACACAGCTGGAAGTAGTAAAGGAGGGAGAGGCGGACGGGGAAAGGGAGTCAGCCGAACCAGCAATTCGAGCAGAAGCGGGGACAGTGCCACTCACTGGTCGTGCGAACACTGTACCTTTGTGAACACAAGATCTGCTACCACGTGCGAGATGTGCCATCAACGCCATTGA 2049 44.36 MQPSVCVHRRNPLLSFPLSQNQKPKPHSSILSPPPLFPFLSPLSLPNPKEFAIPQSPISTISPSAMDSEDDLHYSTDVESLDDDCDFYCGDMDMGMGYYSDDDDDPDAEDFVEDDTDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVLHVLNARERTCGICFESYAHSRIKSAACGHPFCASCWEGYISTAINDGPGCLTLRCPDPSCGAVVDQDMINSLTSNEDRDKYARYLLRSYVEDNKKTKWCPAPGCDCAVLFDAGNGNYDVSCLCTYGFCWNVGITNLFYLFKIILHMYLAFLLNLQCTEEAHRPVDCATVEKWVLKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSGTTSSKNTAGSSKGGRGGRGKGVSRTSNSSRSGDSATHWSCEHCTFVNTRSATTCEMCHQRH 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2230566 2239556 - MC07g0116 Mch7g0178 692516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0178 682 ProSiteProfiles Zinc finger RING-type profile. 206 252 IPR001841 -
Mch7g0178 682 MobiDBLite consensus disorder prediction 617 657 - -
Mch7g0178 682 FunFam RBR-type E3 ubiquitin transferase 200 289 - -
Mch7g0178 682 CDD BRcat_RBR_ANKIB1 282 371 - -
Mch7g0178 682 Gene3D - 358 613 - -
Mch7g0178 682 MobiDBLite consensus disorder prediction 617 632 - -
Mch7g0178 682 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 139 178 IPR048962 -
Mch7g0178 682 Pfam IBR domain, a half RING-finger domain 275 326 IPR002867 GO:0008270(InterPro)
Mch7g0178 682 CDD Rcat_RBR_ARI7-like 385 439 - -
Mch7g0178 682 SMART ibrneu5 366 436 IPR002867 GO:0008270(InterPro)
Mch7g0178 682 SMART ibrneu5 275 362 IPR002867 GO:0008270(InterPro)
Mch7g0178 682 CDD RING-HC_ARI6-like 203 264 - -
Mch7g0178 682 MobiDBLite consensus disorder prediction 642 657 - -
Mch7g0178 682 SMART zf_4 657 681 IPR001876 -
Mch7g0178 682 SUPERFAMILY RING/U-box 275 328 - -
Mch7g0178 682 Coils Coil 448 468 - -
Mch7g0178 682 SUPERFAMILY RING/U-box 203 284 - -
Mch7g0178 682 Pfam Ariadne domain 449 610 IPR045840 -
Mch7g0178 682 Pfam IBR domain 384 424 - -
Mch7g0178 682 SUPERFAMILY RING/U-box 381 429 - -
Mch7g0178 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 290 IPR013083 -
Mch7g0178 682 ProSiteProfiles Zinc finger RanBP2 type profile. 651 682 IPR001876 -
Mch7g0178 682 Gene3D - 652 682 - -
Mch7g0178 682 ProSiteProfiles TRIAD supradomain profile. 202 440 IPR044066 -
Mch7g0178 682 ProSitePatterns Zinc finger RanBP2-type signature. 659 678 IPR001876 -
Mch7g0178 682 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 151 487 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Mch7g0178 682 SUPERFAMILY Ran binding protein zinc finger-like 655 680 IPR036443 -
Mch7g0178 682 FunFam RBR-type E3 ubiquitin transferase 363 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0178 Mch-Chr7:2230566 Mch8g2501 Mch-Chr8:27934760 3.68e-319 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0178 K11968 - csv:101223037 1078.16