Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0178 ATGCAGCCTTCTGTTTGCGTACACAGAAGAAATCCTCTTCTTAGCTTTCCTCTCTCCCAAAACCAAAAACCAAAACCCCACTCTTCGATTCTCTCTCCTCCTCCACTTTTCCCCTTTCTCTCTCCTCTTTCTTTACCGAACCCCAAAGAATTTGCCATTCCCCAATCGCCAATTTCGACGATTTCCCCATCCGCCATGGATTCTGAGGACGATCTCCATTACTCCACCGACGTCGAATCCCTCGACGATGATTGCGATTTCTACTGCGGCGATATGGACATGGGTATGGGCTACTACAGCGACGACGACGACGATCCTGACGCCGAGGACTTCGTCGAGGACGACACCGATGATTACTTCGACTCCCGCCGCCGCGAGCAAAACTATACCATTCTAAATGAATCAGATATACGGCAGCGCCAAGAGGATGACATTACAAGAATTTCGTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCTGATGAAGCTCGAGTAAGAAAACAAGTTGGCTTGTTGGAAGCACCTGTTTTACATGTCTTGAATGCTAGAGAACGTACTTGTGGAATCTGTTTTGAGTCCTATGCACATAGTAGGATCAAGTCAGCAGCATGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGTTACATTAGCACAGCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTTGATCAAGACATGATCAATTCATTAACCTCAAATGAAGACAGGGACAAATATGCCCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACAAAATGGTGCCCAGCTCCTGGTTGTGATTGTGCTGTTCTCTTTGATGCTGGTAATGGGAACTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAATGTTGGTATCACCAATCTTTTCTATCTTTTTAAAATTATTTTACATATGTATTTAGCTTTTCTTTTGAATCTTCAGTGTACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGGTTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACATGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCAGATCATGGCGAAAGAACTGGTGGCTTTTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGGAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGACAAAAAGCACTAGCAGATTTACATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTACCGGAACAGGAGCATGCCAAGAGACAGTTTTTCGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGACTTCATCAATGCGCTGAAAAGGAACTACTACAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCACACGGAGCGTGCAGCGGCACAACAAGCTCAAAAAACACAGCTGGAAGTAGTAAAGGAGGGAGAGGCGGACGGGGAAAGGGAGTCAGCCGAACCAGCAATTCGAGCAGAAGCGGGGACAGTGCCACTCACTGGTCGTGCGAACACTGTACCTTTGTGAACACAAGATCTGCTACCACGTGCGAGATGTGCCATCAACGCCATTGA 2049 44.36 MQPSVCVHRRNPLLSFPLSQNQKPKPHSSILSPPPLFPFLSPLSLPNPKEFAIPQSPISTISPSAMDSEDDLHYSTDVESLDDDCDFYCGDMDMGMGYYSDDDDDPDAEDFVEDDTDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVLHVLNARERTCGICFESYAHSRIKSAACGHPFCASCWEGYISTAINDGPGCLTLRCPDPSCGAVVDQDMINSLTSNEDRDKYARYLLRSYVEDNKKTKWCPAPGCDCAVLFDAGNGNYDVSCLCTYGFCWNVGITNLFYLFKIILHMYLAFLLNLQCTEEAHRPVDCATVEKWVLKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSGTTSSKNTAGSSKGGRGGRGKGVSRTSNSSRSGDSATHWSCEHCTFVNTRSATTCEMCHQRH 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2230566 2239556 - MC07g0116 Mch7g0178 692516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0178 682 ProSiteProfiles Zinc finger RING-type profile. 206 252 IPR001841 -
Mch7g0178 682 MobiDBLite consensus disorder prediction 617 657 - -
Mch7g0178 682 FunFam RBR-type E3 ubiquitin transferase 200 289 - -
Mch7g0178 682 CDD BRcat_RBR_ANKIB1 282 371 - -
Mch7g0178 682 Gene3D - 358 613 - -
Mch7g0178 682 MobiDBLite consensus disorder prediction 617 632 - -
Mch7g0178 682 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 139 178 IPR048962 -
Mch7g0178 682 Pfam IBR domain, a half RING-finger domain 275 326 IPR002867 GO:0008270(InterPro)
Mch7g0178 682 CDD Rcat_RBR_ARI7-like 385 439 - -
Mch7g0178 682 SMART ibrneu5 366 436 IPR002867 GO:0008270(InterPro)
Mch7g0178 682 SMART ibrneu5 275 362 IPR002867 GO:0008270(InterPro)
Mch7g0178 682 CDD RING-HC_ARI6-like 203 264 - -
Mch7g0178 682 MobiDBLite consensus disorder prediction 642 657 - -
Mch7g0178 682 SMART zf_4 657 681 IPR001876 -
Mch7g0178 682 SUPERFAMILY RING/U-box 275 328 - -
Mch7g0178 682 Coils Coil 448 468 - -
Mch7g0178 682 SUPERFAMILY RING/U-box 203 284 - -
Mch7g0178 682 Pfam Ariadne domain 449 610 IPR045840 -
Mch7g0178 682 Pfam IBR domain 384 424 - -
Mch7g0178 682 SUPERFAMILY RING/U-box 381 429 - -
Mch7g0178 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 290 IPR013083 -
Mch7g0178 682 ProSiteProfiles Zinc finger RanBP2 type profile. 651 682 IPR001876 -
Mch7g0178 682 Gene3D - 652 682 - -
Mch7g0178 682 ProSiteProfiles TRIAD supradomain profile. 202 440 IPR044066 -
Mch7g0178 682 ProSitePatterns Zinc finger RanBP2-type signature. 659 678 IPR001876 -
Mch7g0178 682 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 151 487 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Mch7g0178 682 SUPERFAMILY Ran binding protein zinc finger-like 655 680 IPR036443 -
Mch7g0178 682 FunFam RBR-type E3 ubiquitin transferase 363 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0178 K11968 - - csv:101223037 1078.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0178 Mch-Chr7:2230566 Mch8g2501 Mch-Chr8:27934760 3.68e-319 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g1136 . 164 590 ARIADNE family AT4G34370 73.0 3.0e-185 644.8
Mch2g1136 . 58 542 ARIADNE family AT2G16090 77.4 7.5e-225 776.5
Mch2g1136 . 38 543 ARIADNE family AT3G27710 62.0 5.4e-184 641.0
Mch2g1136 . 44 523 ARIADNE family AT3G27720 54.3 8.5e-144 507.3
Mch8g2501 . 61 548 ARIADNE family AT1G05890 72.7 3.8e-223 771.2
Mch7g0178 . 127 626 ARIADNE family AT1G05890 69.0 2.3e-212 735.3
Mch8g2501 . 24 595 ARIADNE family AT1G65430 75.3 7.3e-264 906.4
Mch7g0178 . 110 679 ARIADNE family AT1G65430 68.9 1.1e-240 829.3
Mch8g2501 . 48 458 ARIADNE family AT2G31780 57.1 4.6e-149 524.6
Mch7g0178 . 112 545 ARIADNE family AT2G31780 54.5 3.6e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72