Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch7g0178 | ATGCAGCCTTCTGTTTGCGTACACAGAAGAAATCCTCTTCTTAGCTTTCCTCTCTCCCAAAACCAAAAACCAAAACCCCACTCTTCGATTCTCTCTCCTCCTCCACTTTTCCCCTTTCTCTCTCCTCTTTCTTTACCGAACCCCAAAGAATTTGCCATTCCCCAATCGCCAATTTCGACGATTTCCCCATCCGCCATGGATTCTGAGGACGATCTCCATTACTCCACCGACGTCGAATCCCTCGACGATGATTGCGATTTCTACTGCGGCGATATGGACATGGGTATGGGCTACTACAGCGACGACGACGACGATCCTGACGCCGAGGACTTCGTCGAGGACGACACCGATGATTACTTCGACTCCCGCCGCCGCGAGCAAAACTATACCATTCTAAATGAATCAGATATACGGCAGCGCCAAGAGGATGACATTACAAGAATTTCGTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCTGATGAAGCTCGAGTAAGAAAACAAGTTGGCTTGTTGGAAGCACCTGTTTTACATGTCTTGAATGCTAGAGAACGTACTTGTGGAATCTGTTTTGAGTCCTATGCACATAGTAGGATCAAGTCAGCAGCATGTGGTCATCCTTTCTGTGCCTCCTGCTGGGAAGGTTACATTAGCACAGCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTTGATCAAGACATGATCAATTCATTAACCTCAAATGAAGACAGGGACAAATATGCCCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACAAAATGGTGCCCAGCTCCTGGTTGTGATTGTGCTGTTCTCTTTGATGCTGGTAATGGGAACTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAATGTTGGTATCACCAATCTTTTCTATCTTTTTAAAATTATTTTACATATGTATTTAGCTTTTCTTTTGAATCTTCAGTGTACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGGTTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACATGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCAGATCATGGCGAAAGAACTGGTGGCTTTTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGGAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGACAAAAAGCACTAGCAGATTTACATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTACCGGAACAGGAGCATGCCAAGAGACAGTTTTTCGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGACTTCATCAATGCGCTGAAAAGGAACTACTACAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCACACGGAGCGTGCAGCGGCACAACAAGCTCAAAAAACACAGCTGGAAGTAGTAAAGGAGGGAGAGGCGGACGGGGAAAGGGAGTCAGCCGAACCAGCAATTCGAGCAGAAGCGGGGACAGTGCCACTCACTGGTCGTGCGAACACTGTACCTTTGTGAACACAAGATCTGCTACCACGTGCGAGATGTGCCATCAACGCCATTGA | 2049 | 44.36 | MQPSVCVHRRNPLLSFPLSQNQKPKPHSSILSPPPLFPFLSPLSLPNPKEFAIPQSPISTISPSAMDSEDDLHYSTDVESLDDDCDFYCGDMDMGMGYYSDDDDDPDAEDFVEDDTDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVLHVLNARERTCGICFESYAHSRIKSAACGHPFCASCWEGYISTAINDGPGCLTLRCPDPSCGAVVDQDMINSLTSNEDRDKYARYLLRSYVEDNKKTKWCPAPGCDCAVLFDAGNGNYDVSCLCTYGFCWNVGITNLFYLFKIILHMYLAFLLNLQCTEEAHRPVDCATVEKWVLKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSGTTSSKNTAGSSKGGRGGRGKGVSRTSNSSRSGDSATHWSCEHCTFVNTRSATTCEMCHQRH | 682 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2230566 | 2239556 | - | MC07g0116 | Mch7g0178 | 692516 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch7g0178 | 682 | ProSiteProfiles | Zinc finger RING-type profile. | 206 | 252 | IPR001841 | - | |
Mch7g0178 | 682 | MobiDBLite | consensus disorder prediction | 617 | 657 | - | - | |
Mch7g0178 | 682 | FunFam | RBR-type E3 ubiquitin transferase | 200 | 289 | - | - | |
Mch7g0178 | 682 | CDD | BRcat_RBR_ANKIB1 | 282 | 371 | - | - | |
Mch7g0178 | 682 | Gene3D | - | 358 | 613 | - | - | |
Mch7g0178 | 682 | MobiDBLite | consensus disorder prediction | 617 | 632 | - | - | |
Mch7g0178 | 682 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 139 | 178 | IPR048962 | - | |
Mch7g0178 | 682 | Pfam | IBR domain, a half RING-finger domain | 275 | 326 | IPR002867 | GO:0008270(InterPro) | |
Mch7g0178 | 682 | CDD | Rcat_RBR_ARI7-like | 385 | 439 | - | - | |
Mch7g0178 | 682 | SMART | ibrneu5 | 366 | 436 | IPR002867 | GO:0008270(InterPro) | |
Mch7g0178 | 682 | SMART | ibrneu5 | 275 | 362 | IPR002867 | GO:0008270(InterPro) | |
Mch7g0178 | 682 | CDD | RING-HC_ARI6-like | 203 | 264 | - | - | |
Mch7g0178 | 682 | MobiDBLite | consensus disorder prediction | 642 | 657 | - | - | |
Mch7g0178 | 682 | SMART | zf_4 | 657 | 681 | IPR001876 | - | |
Mch7g0178 | 682 | SUPERFAMILY | RING/U-box | 275 | 328 | - | - | |
Mch7g0178 | 682 | Coils | Coil | 448 | 468 | - | - | |
Mch7g0178 | 682 | SUPERFAMILY | RING/U-box | 203 | 284 | - | - | |
Mch7g0178 | 682 | Pfam | Ariadne domain | 449 | 610 | IPR045840 | - | |
Mch7g0178 | 682 | Pfam | IBR domain | 384 | 424 | - | - | |
Mch7g0178 | 682 | SUPERFAMILY | RING/U-box | 381 | 429 | - | - | |
Mch7g0178 | 682 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 290 | IPR013083 | - | |
Mch7g0178 | 682 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 651 | 682 | IPR001876 | - | |
Mch7g0178 | 682 | Gene3D | - | 652 | 682 | - | - | |
Mch7g0178 | 682 | ProSiteProfiles | TRIAD supradomain profile. | 202 | 440 | IPR044066 | - | |
Mch7g0178 | 682 | ProSitePatterns | Zinc finger RanBP2-type signature. | 659 | 678 | IPR001876 | - | |
Mch7g0178 | 682 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 151 | 487 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Mch7g0178 | 682 | SUPERFAMILY | Ran binding protein zinc finger-like | 655 | 680 | IPR036443 | - | |
Mch7g0178 | 682 | FunFam | RBR-type E3 ubiquitin transferase | 363 | 613 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch7g0178 | Mch-Chr7:2230566 | Mch8g2501 | Mch-Chr8:27934760 | 3.68e-319 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch7g0178 | K11968 | - | csv:101223037 | 1078.16 |