Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch7g0647 | ATGGGTTTTCCGGTGGGTTGCACGGAGGTATTCTTCCCGACAATTTTCCTCCACTTCCTCTCCCTCCTCGATTTCCTCAAAAAGCTCATTCTGACGCTCTTCCGCCTGCTGGGCCTGCCGGAGTTTATCGAGACGGACGGAATCTGGCCGGAGCCCCGATTGCCCGCCAACCCGCCCGCGTCGGCCGTCCTGATCCGCGAATTCCTGCCGGTCGTCAAATTCTCCGACGTCGCCGAGGCCTCCGGCGGCGAGAGCTGCGCCGTTTGCCTGTACGAGTTCGAGGCGGCGGAGGAAATCCGGTGGCTGACGAATTGCCGGCATATTTTTCACCGGGGGTGTCTGGACCGTTGGATGGATCACGATCAGAAGACGTGTCCGCTGTGCAGGACGCCGTTTGTCCCAGATGGGATGCAGGACGAGTTCAATCAACGGCTCTGGGCCGCCTCCGGAATCGCTGAGTTCGATCCCGAGTTCAACTCGGTTTTAGGT | 489 | 60.12 | MGFPVGCTEVFFPTIFLHFLSLLDFLKKLILTLFRLLGLPEFIETDGIWPEPRLPANPPASAVLIREFLPVVKFSDVAEASGGESCAVCLYEFEAAEEIRWLTNCRHIFHRGCLDRWMDHDQKTCPLCRTPFVPDGMQDEFNQRLWAASGIAEFDPEFNSVLG | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 11130262 | 11130750 | + | MC07g0333 | Mch7g0647 | 692985 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch7g0647 | 163 | Pfam | Ring finger domain | 85 | 129 | IPR001841 | - | |
| Mch7g0647 | 163 | SUPERFAMILY | RING/U-box | 85 | 135 | - | - | |
| Mch7g0647 | 163 | SMART | ringv_2 | 85 | 129 | IPR011016 | GO:0008270(InterPro) | |
| Mch7g0647 | 163 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 10 | 136 | - | - | |
| Mch7g0647 | 163 | SMART | ring_2 | 86 | 128 | IPR001841 | - | |
| Mch7g0647 | 163 | FunFam | RING-H2 finger protein ATL73 | 65 | 136 | - | - | |
| Mch7g0647 | 163 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 129 | IPR001841 | - | |
| Mch7g0647 | 163 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 135 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g0458 | Mch-Chr2:3340651 | Mch7g0647 | Mch-Chr7:11130262 | 2.07E-15 | dispersed | |
| Mch6g2410 | Mch-Chr6:26023092 | Mch7g0647 | Mch-Chr7:11130262 | 4.61E-54 | dispersed | |
| Mch6g2369 | Mch-Chr6:25572383 | Mch7g0647 | Mch-Chr7:11130262 | 1.28E-14 | transposed | |
| Mch5g0404 | Mch-Chr5:2769373 | Mch7g0647 | Mch-Chr7:11130262 | 1.37E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch7g0647 | K16281 | - | csv:101220424 | 239.195 |