Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0683 ATGGATCGGAGGGATCCGATGGCGTTATCGGGTTCGCAATCTTTCTATATGCAGAGGGGAATCACTGGCTCTGGCTCTGGAGCTCAGGGCCTGCGTTCCTCAACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGAAACAATGTTGGATCAGGGTTACCAATGGATCCCAACCCTGCCATTTCACCTTACGGTGGCAATGTGGGTGCTCAATCTGGTGGCGTCGTTACGACCGAGCCCATGAAGCGGAAGCGTGGTCGGCCTCGCAAGTATGGGACCGAAGGGACTGTCTCTTTGGCACTCTCTCCCTCCCCTGCCTCTGCAAATCCAGCAACTGCAGCTTCATCCCCGAAGCGAGGAAGGGGGCGGCCTCCCGGCTCGGGAAAGAAGCAGCAATTGGCTTCTCTTGGTGAAACACTTTCTGGATCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGCTGCCAAAATTATGTCATTTTCACAACAGGGACCAAGAGTTGTATGCATCTTATCAGCAAATGGTGCGGTCTCGACTGTTACCCTTCGTCAGCCTTCGACTTCTGGAGGCACGGTCACATACGAGGGGCGTTTTGAGATAATATGTCTGTCGGGCTCATATGCACTTGGAGAAAATACTGGTTCCAGGAACCGCACTGGTGGCCTGAGTGTCTCCCTTGCCAGCCCTGATGGTCGGGTTATCGGCGGTGGAGTAGGAGGAGCACTCATCGCAGCGACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGCAGTTCAAAGATGAAGTACAAGAAGAGGGAAGCTGTCGAAGGTGTCATCGACTCGGATCATCAGACAGTTGACCATGCTGTTGGAATGGCGAGTGTTCCACAGAACCAGAATCTGACTCCAACCTCCTCGGTGAGTATGTGGCCGTCCTCGCAGTCTCTGGACATGCGCAATGCCCACATTGACATCGATCTGATGCGCGGGTGA 1005 53.43 MDRRDPMALSGSQSFYMQRGITGSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVTTEPMKRKRGRPRKYGTEGTVSLALSPSPASANPATAASSPKRGRGRPPGSGKKQQLASLGETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGENTGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKMKYKKREAVEGVIDSDHQTVDHAVGMASVPQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11542434 11548037 + MC07g0364 Mch7g0683 693021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0683 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Mch7g0683 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Mch7g0683 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Mch7g0683 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 317 IPR039605 GO:0003680(InterPro)
Mch7g0683 334 CDD DUF296 150 264 IPR005175 -
Mch7g0683 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Mch7g0683 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Mch7g0683 334 MobiDBLite consensus disorder prediction 98 115 - -
Mch7g0683 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 270 - -
Mch7g0683 334 MobiDBLite consensus disorder prediction 11 52 - -
Mch7g0683 334 Gene3D - 151 283 - -
Mch7g0683 334 MobiDBLite consensus disorder prediction 1 135 - -
Mch7g0683 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Mch7g0683 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2172 Mch-Chr6:24087948 Mch7g0683 Mch-Chr7:11542434 6.25E-65 dispersed
Mch6g2581 Mch-Chr6:27682019 Mch7g0683 Mch-Chr7:11542434 1.20E-74 dispersed
Mch6g2671 Mch-Chr6:28422144 Mch7g0683 Mch-Chr7:11542434 1.51E-96 dispersed
Mch7g0683 Mch-Chr7:11542434 Mch8g1968 Mch-Chr8:21661907 3.49E-74 dispersed
Mch7g0683 Mch-Chr7:11542434 Mch10g1504 Mch-Chr10:15008879 2.26E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0683 - - - 0.0