Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0712 ATGATTCATAGTGGACTTGATGATATTGGCAAAGCGAAAGCAATTGCAGGGAAAGTGATACAGGAGGTCAATAGAAAATACAAGTGTTTAGAAATTGATCTCGATGGTTTGTACAAGAGAATGCTGCTTCTGAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTGCAAGGAAGGAATGCCGTATGAGGTTATTGAGCGCAAGGGTCTTGATATGGTTCGCCGTGACTGGTGTTTATTATCAAAGGAATTAGGAGATTTCTGCTTGGGTCAAATATTGTCTGGAGGGTCATGTGATGATGTCATTGAGTCAATACATGACTCTCTTAGGAAGATACAAGATGATATTAGGAGAGGGCAAGTAGCACTTGAGAAATATATCATCAGGAAGACATTGACTAAGCCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCGCAAAGGTTAAAACAAATAGGTTATCTTACGGGCTGTTATGTTGGTGATACGATCCCGTATATAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTACAGGCATTGCTCAGCGGGCTAGACATCCTGAAGAACTTAAAAGAGAAGGTGGAAAGTGGATGATTGATACTGATTACTACTTGTCACAGCAGATACACCCTGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACAAGCCCAGAATGCTTGGCTCACTGTCTGGGGCTTGATCCATCGAAGTTCAAGATCAAATCATGTGAAGTTTTCAGCAGCGATGTCTCCTCTTCCCTCGTGTCCTGCGTAACTGATGAGCAAAGGTACCTGGACTGTAAACCACTGGTATTGACTTGCCCTAGGTGTTATGGTACTTTCGAAGTTCCTACTATCTTCAGTTCTATATACAAATCAACATATGGAAAGCAAGAAAGACCAGTGGTTGATGAACCTACAAAAAAGTTTTGGAGTAATTTCAAATGTCCAAACTGCAAGGATTTGTTATGGGTCCCTGACGAAGCTAATGCTACGGGTAGGGGTAGAATGACGTGTGGAATGATTTCCAACCAGGTAAAAATGCAAACAGACAGGTTCATTGCAAAGTATTATCATGGCTTAATGATGTGCGACGAGGAAACATGCAAATACACCACATGTATTGTCAACCTTCAACGTGCGGGTGACTCCAAAAAAGAGATTCTCTGCCCAAAATATCCTCAGTGTGATGGGCGTCTCGTAAGAACGTATACTAAGGCGGACTTGTGGAAGCAGATTTGTTATTTTTGTCACGTGTTGGATACTGAACGCTGTATGGAAAAGCTGGAGGTTCATAGAAGGGTAGCTTTAGAAAAAGAAATGGCAAAGATTCGAGCATTGGTAAAGTTGGCTGCATCGACGGTTAATAAGGTTCGATATCGCAGCGCATATGGTTCCATTAAGTTGAAGGATATTGCAGTGAGTTTGCATATGGCACCATGTTAG 1470 42.24 MIHSGLDDIGKAKAIAGKVIQEVNRKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQCKEGMPYEVIERKGLDMVRRDWCLLSKELGDFCLGQILSGGSCDDVIESIHDSLRKIQDDIRRGQVALEKYIIRKTLTKPPEAYPDARNQPHVQVAQRLKQIGYLTGCYVGDTIPYIICCEQGSTSGGSTGIAQRARHPEELKREGGKWMIDTDYYLSQQIHPVVSRLCASIQGTSPECLAHCLGLDPSKFKIKSCEVFSSDVSSSLVSCVTDEQRYLDCKPLVLTCPRCYGTFEVPTIFSSIYKSTYGKQERPVVDEPTKKFWSNFKCPNCKDLLWVPDEANATGRGRMTCGMISNQVKMQTDRFIAKYYHGLMMCDEETCKYTTCIVNLQRAGDSKKEILCPKYPQCDGRLVRTYTKADLWKQICYFCHVLDTERCMEKLEVHRRVALEKEMAKIRALVKLAASTVNKVRYRSAYGSIKLKDIAVSLHMAPC 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11785867 11789840 + MC07g_new0325 Mch7g0712 693050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0712 489 Coils Coil 20 40 - -
Mch7g0712 489 Gene3D Palm domain of DNA polymerase 1 71 IPR023211 -
Mch7g0712 489 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1 484 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Mch7g0712 489 Gene3D - 72 253 IPR042087 -
Mch7g0712 489 SUPERFAMILY DNA/RNA polymerases 1 241 IPR043502 -
Mch7g0712 489 Gene3D DNA Polymerase alpha, zinc finger 260 473 IPR038256 -
Mch7g0712 489 FunFam DNA polymerase 70 255 - -
Mch7g0712 489 Pfam DNA Polymerase alpha zinc finger 264 480 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Mch7g0712 489 Pfam DNA polymerase family B 1 227 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0712 K02320 - - csv:101211201 720.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1301 Mch-Chr2:9157208 Mch7g0712 Mch-Chr7:11785867 3.94E-286 dispersed
Mch2g1302 Mch-Chr2:9173321 Mch7g0712 Mch-Chr7:11785867 9.55E-273 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1154 . 103 796 Core DNA Replication Machinery Family AT4G14700 65.6 5.3e-268 920.6
Mch6g1154 . 103 796 Core DNA Replication Machinery Family AT4G12620 68.3 6.9e-276 946.8
Mch8g0708 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.8 1.9e-145 512.3
Mch9g1918 . 9 377 Core DNA Replication Machinery Family AT2G01120 57.3 2.5e-128 455.7
Mch7g0665 . 4 537 Core DNA Replication Machinery Family AT4G29910 58.2 4.1e-174 608.2
Mch8g1810 . 1 262 Core DNA Replication Machinery Family AT1G26840 67.2 6.7e-93 337.4
Mch4g0034 . 1 801 Core DNA Replication Machinery Family AT1G79150 60.1 1.8e-250 862.4
Mch5g1103 . 1 944 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1368.6
Mch1g2016 . 1 577 Core DNA Replication Machinery Family AT5G46280 81.0 2.2e-268 921.4
Mch4g0567 . 1 846 Core DNA Replication Machinery Family AT2G16440 75.0 0.0e+00 1179.9
Mch8g3014 . 64 799 Core DNA Replication Machinery Family AT2G07690 78.7 0.0e+00 1116.3
Mch1g2181 . 72 889 Core DNA Replication Machinery Family AT5G44635 69.0 0.0e+00 1120.1
Mch9g0661 . 9 720 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1217.6
Mch6g0781 . 38 548 Core DNA Replication Machinery Family AT2G29680 56.8 1.8e-152 536.2
Mch6g0781 . 42 509 Core DNA Replication Machinery Family AT1G07270 57.1 4.3e-137 485.0
Mch11g1097 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 1.6e-258 888.6
Mch9g0023 . 1 594 Core DNA Replication Machinery Family AT3G25100 75.8 9.0e-257 882.9
Mch5g1783 . 26 792 Core DNA Replication Machinery Family AT3G09660 72.6 1.1e-313 1072.4
Mch2g0991 . 1 415 Core DNA Replication Machinery Family AT2G20980 54.5 2.4e-112 402.5
Mch11g0853 . 1 970 Core DNA Replication Machinery Family AT1G77320 50.8 7.5e-264 907.1
Mch9g0405 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.5 1.4e-76 282.7
Mch11g1327 . 1 197 Core DNA Replication Machinery Family AT1G80190 66.5 5.0e-74 274.2
Mch10g0366 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 2.3e-60 228.4
Mch4g2505 . 1 186 Core DNA Replication Machinery Family AT1G19080 69.9 2.5e-72 268.5
Mch4g2505 . 1 186 Core DNA Replication Machinery Family AT3G55490 69.9 2.5e-72 268.5
Mch5g0403 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 5.1e-52 201.1
Mch2g1301 . 1 1540 Core DNA Replication Machinery Family AT5G67100 57.4 0.0e+00 1687.2
Mch2g1302 . 5 1373 Core DNA Replication Machinery Family AT5G67100 58.6 0.0e+00 1540.0
Mch7g0712 . 1 482 Core DNA Replication Machinery Family AT5G67100 56.9 6.9e-160 562.4
Mch9g2341 . 2 640 Core DNA Replication Machinery Family AT1G67630 58.3 1.6e-208 722.6
Mch7g0065 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.3 1.2e-177 619.8
Mch11g1789 . 1 448 Core DNA Replication Machinery Family AT5G41880 65.1 4.1e-177 617.8
Mch1g0987 . 7 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1794.6
Mch5g1437 . 82 530 Core DNA Replication Machinery Family AT2G42120 71.8 7.3e-195 676.8
Mch7g0065 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.3 1.2e-177 619.8
Mch2g0263 . 1 2086 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2972.6
Mch3g1547 . 1 2051 Core DNA Replication Machinery Family AT1G08260 69.5 0.0e+00 2874.0
Mch2g0263 . 9 2205 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2946.8
Mch3g1547 . 19 2158 Core DNA Replication Machinery Family AT2G27120 66.4 0.0e+00 2859.3
Mch3g1789 . 7 490 Core DNA Replication Machinery Family AT5G22110 68.5 1.7e-192 669.1
Mch2g0211 . 1 929 Core DNA Replication Machinery Family AT5G22010 62.7 1.0e-307 1052.7
Mch10g1470 . 46 376 Core DNA Replication Machinery Family AT1G63160 90.6 5.9e-173 603.6
Mch1g0517 . 1 355 Core DNA Replication Machinery Family AT5G27740 85.4 1.3e-178 622.5
Mch11g0851 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.5 7.5e-152 533.5
Mch4g1788 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.6 4.0e-154 541.2
Mch8g3235 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.2 1.0e-250 862.8
Mch10g1720 . 34 697 Core DNA Replication Machinery Family AT2G06510 51.3 4.1e-196 681.4
Mch6g0297 . 7 638 Core DNA Replication Machinery Family AT5G08020 67.5 4.0e-244 840.9
Mch10g1720 . 10 800 Core DNA Replication Machinery Family AT5G45400 50.6 4.2e-223 771.5
Mch6g0297 . 7 635 Core DNA Replication Machinery Family AT5G61000 63.7 1.1e-236 816.2
Mch10g1720 . 5 815 Core DNA Replication Machinery Family AT4G19130 52.9 3.2e-225 778.5
Mch11g0615 . 1 274 Core DNA Replication Machinery Family AT2G24490 50.2 8.7e-69 257.3
Mch6g2735 . 1 383 Core DNA Replication Machinery Family AT5G26680 85.9 4.8e-188 654.1
Mch5g0260 . 1 1110 Core DNA Replication Machinery Family AT1G08840 53.2 1.0e-303 1039.6
Mch5g0930 . 1 298 Core DNA Replication Machinery Family AT2G25100 67.1 4.7e-115 411.0
Mch2g0315 . 1 807 Core DNA Replication Machinery Family AT1G08130 66.5 4.8e-298 1020.4
Mch2g0315 . 206 807 Core DNA Replication Machinery Family AT1G49250 68.8 3.4e-241 831.2