Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0740 ATGGGGAGAGGGCGAGTTGAGCTGAAGAGAATAGAGAACAAAATAAACCGCCAAGTGACGTTTTCGAAGCGCCGAAACGGGCTGCTCAAAAAGGCCTATGAACTCTCAGTTCTCTGCGACGCTGAGGTCGCTCTCATCATCTTCTCCAGCCGTGGGAAGCTCTATGAATTTGGCAGCGCTGGTACGACCAAAACATTGGAGCGATATCAACGTTGTTGCTTCTCTCCACAGGACAACCATATTGAGCGACAAACCCAGAGTTGGTTCCAAGAGATCTCGAAACTGAAAGTTAAATATGAATCTCTATGTCGAACCCAACGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAACCTTGAAAAGCAACTTGAAGCAGCCCTTGCCCAAGCTAGACAAAGGAAGGAGCGGCAACTTGGGGACCTCAACAAAGAGCTAAGGCTCAAGCTTGAGGCAGAGGGACAGAATCTTAAAGCCATCCAAAGTTTCTGGAGCTCTAGCTCTGCAGCTGCTGGACATGGCAACGACTTCCCATTGCATCATTCTCAAGCCAGCCCTATCGAGTGCCAACACGAACAACCCGTCTTACAAATCGGGTATCAGAATTATTTCTCAGCAGAGGGGCCATCTGTCCGAAAGAGCATGACAACATGTGAGACAAACTTCATACAAGGATGGGTTATT 699 48.21 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQDNHIERQTQSWFQEISKLKVKYESLCRTQRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKERQLGDLNKELRLKLEAEGQNLKAIQSFWSSSSAAAGHGNDFPLHHSQASPIECQHEQPVLQIGYQNYFSAEGPSVRKSMTTCETNFIQGWVI 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12021991 12026884 + MC07g0410 Mch7g0740 693078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0740 233 ProSiteProfiles K-box domain profile. 85 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch7g0740 233 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch7g0740 233 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0740 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch7g0740 233 Coils Coil 119 157 - -
Mch7g0740 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0740 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0740 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0740 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0740 233 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0740 233 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0740 233 FunFam MADS-box transcription factor 1 13 86 - -
Mch7g0740 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch7g0740 233 Pfam K-box region 82 154 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch7g0740 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0203 Mch-Chr10:1214979 Mch7g0740 Mch-Chr7:12021991 1.37E-54 dispersed
Mch3g1336 Mch-Chr3:16103460 Mch7g0740 Mch-Chr7:12021991 1.10E-46 dispersed
Mch7g0724 Mch-Chr7:11860623 Mch7g0740 Mch-Chr7:12021991 1.56E-17 dispersed
Mch7g0740 Mch-Chr7:12021991 Mch8g2368 Mch-Chr8:26794936 1.27E-60 dispersed
Mch7g0740 Mch-Chr7:12021991 Mch7g0741 Mch-Chr7:12030179 1.21E-37 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43707 PF01486 K-box 4.60E-19 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0740 K09264 - csv:101219421 348.591