Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch7g0741 | ATGGTGAGAGGGAAGACACAGATGAGGCTAATAGAGAACGCCACAAGCCGGCAAGTGACCTTCTCCAAGAGGAGAAATGGACTGATGAAGAAGGCTTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTTATAATCTTCTCCCCTAGAGGAAAGCTTTACGAATTTGCAAGCTCAAGCATGCAGGCAACTATAGAACGTTACCGAAAGCATGCAAAAACCAAAGAAGTCATTGATTCTTCATCTGTGAACATGCAGTTGGAGCATCTGAATCAAGAAGAAGCAGCAAACCTGATGAAGAAGATAGAGCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATTGATGAACTTCAAGAACTTGAACAACAGTTGGAGAAAAGTGTGTGCAGAGTTAGAGCCAGAAAGGTGGAAGTGTTTGAAGAACAGATCAGCCAACTAAAGCAAAAGGAGAAAGTCTTGGAAGCTGAAAATGCTAGTCTTCTTGAAAAGTGGGAGAGAGAGCCAGTGGGGGGAGAAAAGGAAGGGCAAAAAGGAGAGAATTTGGGAAATTATACAGAAAGCAGCAGCCCAATTTCAGAGGTGGAGACAGAGTTGTTCATTGGGCCTCCTGAAACAAGGCCCAGAACTTTTCTTTCCCTTAAT | 669 | 43.65 | MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRKHAKTKEVIDSSSVNMQLEHLNQEEAANLMKKIEQLEVSKRKMLGEDLGSCSIDELQELEQQLEKSVCRVRARKVEVFEEQISQLKQKEKVLEAENASLLEKWEREPVGGEKEGQKGENLGNYTESSSPISEVETELFIGPPETRPRTFLSLN | 223 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 12030179 | 12040047 | - | MC07g0411 | Mch7g0741 | 693079 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch7g0741 | 223 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch7g0741 | 223 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | SUPERFAMILY | SRF-like | 3 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | CDD | MADS_MEF2_like | 3 | 72 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Mch7g0741 | 223 | Coils | Coil | 96 | 116 | - | - | |
| Mch7g0741 | 223 | Pfam | K-box region | 91 | 173 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch7g0741 | 223 | MobiDBLite | consensus disorder prediction | 174 | 202 | - | - | |
| Mch7g0741 | 223 | Gene3D | - | 14 | 94 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch7g0741 | 223 | Coils | Coil | 126 | 172 | - | - | |
| Mch7g0741 | 223 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 185 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Mch7g0741 | 223 | FunFam | MADS-box transcription factor 1 | 13 | 84 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g0200 | Mch-Chr10:1190205 | Mch7g0741 | Mch-Chr7:12030179 | 9.80E-50 | dispersed | |
| Mch1g1377 | Mch-Chr1:15668564 | Mch7g0741 | Mch-Chr7:12030179 | 2.04E-35 | dispersed | |
| Mch5g0344 | Mch-Chr5:2347536 | Mch7g0741 | Mch-Chr7:12030179 | 2.89E-74 | dispersed | |
| Mch6g2500 | Mch-Chr6:26945232 | Mch7g0741 | Mch-Chr7:12030179 | 2.47E-56 | dispersed | |
| Mch6g2721 | Mch-Chr6:28829510 | Mch7g0741 | Mch-Chr7:12030179 | 2.40E-68 | dispersed | |
| Mch7g0741 | Mch-Chr7:12030179 | Mch8g2368 | Mch-Chr8:26794936 | 5.95E-38 | dispersed | |
| Mch7g0740 | Mch-Chr7:12021991 | Mch7g0741 | Mch-Chr7:12030179 | 1.21E-37 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43708 | PF01486 | K-box | 1.20E-25 | No_clan | Mch | TF |
Pathway information