Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0866 ATGGCTGTGACAGCTTTGTTGTACCATTTGCTTTTTTGGGTTTTTGAATCTCTACCTTATTACTGGGAGTTATTTCTGCTCAGTGACAATGCTTGTATCCTAAATCAAAGGAATTGTGGAAAGATAATCTTGGTGACTGGAAGAGAAGGAAAAAAGGGAGAGGACTTTCTGGTTTTTCAAGACAAAGCTCTCTGTAAAGTTCAGTGGTTGATGGTAGAAGAGGAAAGGACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACAATGGCATCGACTTCTTTTCCTGGCGGGAAGCCATTGCCAGTGATTGAAACTTCTTCTAACTGTGTTCTGTACCCACCGCCACAAGCGACGTATGAGGATATCATAGGCAATCCCAAGATCTTCATGACATCCCTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGAGGTAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTCACATCTCGTGGTGGCATTGAGAAGGTTATAAGGGAGAGAAGATGGAAAGAAGTAACATCGGTTTTCAACTTTCCTTCAACTGCAACGAATGCATCTTTTGTTCTGAGGAAGTATTATCTTTCTTTGCTTCATCATTTCGAGCAGATTCACTTCTTCAAAGCTGTGGGATGGACGCCAATGATTTCTGGCAAGTATTCTCCTCAGTGCCCGAGCCCAGCGCCGATCCCTACGCAAGGGACGCCCTCTATGTGGCCACCATCAGATAATCAGGCAGCCATGTCCCAGCAACCGCGGACTTCCACTACCGAACTTCCAGCAGTTGCACCAAGTTCGGCGTCAGCAGCAGGGTTTCCGGTGATTGGAGTCATTGATGGAAAATTTGATAGCGGGTATCTTGTTACTGTTACCATAGGATCGGAGAAGCTAAAAGGCGTGCTTTATCAGTCTCCTCCCGAGCAACCTGCTCAGCAACAAGTATTGCAGCCTGATGGTGTTTTTGCCAAAGATGGTGCTACCTCCATGGCACCAAATGCTCATCGCCGTCGTCGTAGGAAGAAATCCGAGATAAAACGAAGGGATCCCGCTCATCCAAAGCCGAACAGAAGCGGCTACAACTTTTTCTTTGCTGAGCAGCACGCTAGACTCAAACCATTATACCCAGGGAAGGACAGAGAGATAAGTAGAATGATTGGTGAGCTTTGGAATAAGCTTAATGAGTCAGACAGAACAGTTTATCAAGAGAAAGCCATGAAGGATAAAGAAAGATATCGAATCGAGATGGAGGATTACCGAGAGAAGCTGAGGACGGGCCAGGTCATCAGTGATGCCGTGCCATTACAACAGCGTCTTCCTGAGCCAGACCTGAACATGGTCTATGCTGACAAAAATGAAGAAACTGAGGGTGGCGAATCTCCTCAAACCCCGGATCATGATACTAGTTACGTCGAAGGCGACTCCGGAGAATATAAAACTGAGGAGAAGGAGGAGGATGAGGAAGAGGATTCGGAAGAAGATGCATCTCCACAAAGGGTTGGCAATGTAGATGTTAACGTTTTGGTCGAGGAGGAAGGCGGCGGCGAGACGAGAGCTGCAGAAGAGGATGTTAGAAAAGAGAGTAGTACAGTGGTGGTCGGCGACGAGAAAGAAGTTTTCACCAGAGATTCGTTAATGGAGGAGGCAAAGGAAGAACCAGAACCACCACCACCACCACCAACAACAGCCATTAGAGAAGATTAA 1725 46.78 MAVTALLYHLLFWVFESLPYYWELFLLSDNACILNQRNCGKIILVTGREGKKGEDFLVFQDKALCKVQWLMVEEERTEAGWGSRKELTMASTSFPGGKPLPVIETSSNCVLYPPPQATYEDIIGNPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIHFFKAVGWTPMISGKYSPQCPSPAPIPTQGTPSMWPPSDNQAAMSQQPRTSTTELPAVAPSSASAAGFPVIGVIDGKFDSGYLVTVTIGSEKLKGVLYQSPPEQPAQQQVLQPDGVFAKDGATSMAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLNESDRTVYQEKAMKDKERYRIEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDHDTSYVEGDSGEYKTEEKEEDEEEDSEEDASPQRVGNVDVNVLVEEEGGGETRAAEEDVRKESSTVVVGDEKEVFTRDSLMEEAKEEPEPPPPPPTTAIRED 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13202443 13207131 - MC07g0519 Mch7g0866 693204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0866 574 MobiDBLite consensus disorder prediction 460 574 - -
Mch7g0866 574 SMART bright_3 124 215 IPR001606 GO:0003677(InterPro)
Mch7g0866 574 MobiDBLite consensus disorder prediction 521 561 - -
Mch7g0866 574 MobiDBLite consensus disorder prediction 245 267 - -
Mch7g0866 574 SUPERFAMILY HMG-box 353 432 IPR036910 -
Mch7g0866 574 ProSiteProfiles ARID domain profile. 123 214 IPR001606 GO:0003677(InterPro)
Mch7g0866 574 Coils Coil 409 429 - -
Mch7g0866 574 Pfam ARID/BRIGHT DNA binding domain 126 210 IPR001606 GO:0003677(InterPro)
Mch7g0866 574 MobiDBLite consensus disorder prediction 340 354 - -
Mch7g0866 574 CDD HMG-box_AtHMGB9-like 360 426 - -
Mch7g0866 574 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 99 476 - -
Mch7g0866 574 SMART hmgende2 359 428 IPR009071 -
Mch7g0866 574 CDD ARID_HMGB9-like 125 210 IPR045303 GO:0003677(InterPro)
Mch7g0866 574 MobiDBLite consensus disorder prediction 331 367 - -
Mch7g0866 574 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 360 427 IPR009071 -
Mch7g0866 574 Gene3D - 120 217 IPR036431 GO:0003677(InterPro)
Mch7g0866 574 MobiDBLite consensus disorder prediction 486 501 - -
Mch7g0866 574 SMART ARID_2 120 210 - -
Mch7g0866 574 FunFam High mobility group B protein 15 342 437 - -
Mch7g0866 574 SUPERFAMILY ARID-like 124 224 IPR036431 GO:0003677(InterPro)
Mch7g0866 574 MobiDBLite consensus disorder prediction 231 267 - -
Mch7g0866 574 Gene3D High mobility group box domain 344 439 IPR036910 -
Mch7g0866 574 FunFam High mobility group B protein 15 117 228 - -
Mch7g0866 574 Pfam HMG (high mobility group) box 360 427 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0866 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0083 Mch-Chr11:538856 Mch7g0866 Mch-Chr7:13202443 3.75E-88 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch7g0866 . 115 457 ARID Transcription Factor Family AT1G04880 60.7 1.3e-109 393.7
Mch10g1836 . 200 479 ARID Transcription Factor Family AT1G20910 60.1 3.0e-91 332.4
Mch11g0083 . 16 309 ARID Transcription Factor Family AT1G76110 67.9 3.5e-112 401.7
Mch10g1836 . 188 509 ARID Transcription Factor Family AT1G76510 60.8 7.1e-110 394.4
Mch8g1003 . 2 781 ARID Transcription Factor Family AT3G43240 58.0 7.1e-259 890.2
Mch9g0178 . 2 771 ARID Transcription Factor Family AT3G43240 57.9 1.2e-258 889.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43716 PF01388 ARID 2.50E-17 CL0123 Mch TR