Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0872 ATGCTTACCATTGCTGCCCACTGGCACAATTTACTCCCTCCCCTTTATTTCACTGGCTCACTCCCATTATGTAGCCCACAGCTTCCCATTCCGCTCCTTGCTTCTTCTTCACCATCGTTTCTCTGCCGTCTGTGGCCAAATACCCAAATGGGTGGTGACGGAAAGATCTTCACCTTGGCGGAAGTTTCTCAGCACAACACCCCCAAGGACTGTTGGTTGATCATCAATGGCAAGGTTTATAATGTAACCGAGTTCTTGGAGGACCATCCCGGTGGCGACGAGGTCCTATTGTCAGGCACAGGTAAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGATAGTGCAAGAGAAACAATGAACAAATACTATGTTGGGGAGATCGATATCTCAACGATCCCGGAAAAGATGACATACTCAGCTACAAAGCAGCCTCACTACAATCAGGATAAGACGACCGAGTTCATCGTCAAGCTCCTCCAGTTCCTCGTCCCTCTCGCAATCTTGGGTTTGGCAGTCGGTATCCGCTTTTACACCAAATCAACCTGA 552 48.19 MLTIAAHWHNLLPPLYFTGSLPLCSPQLPIPLLASSSPSFLCRLWPNTQMGGDGKIFTLAEVSQHNTPKDCWLIINGKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSDSARETMNKYYVGEIDISTIPEKMTYSATKQPHYNQDKTTEFIVKLLQFLVPLAILGLAVGIRFYTKST 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13249802 13253293 + MC07g0523 Mch7g0872 693210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0872 183 SMART Cyt_b5_2 57 130 IPR001199 -
Mch7g0872 183 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 54 135 IPR036400 -
Mch7g0872 183 PRINTS Cytochrome B5 signature 79 89 IPR001199 -
Mch7g0872 183 PRINTS Cytochrome B5 signature 104 111 IPR001199 -
Mch7g0872 183 PRINTS Cytochrome B5 signature 89 103 IPR001199 -
Mch7g0872 183 PRINTS Cytochrome B5 signature 117 129 IPR001199 -
Mch7g0872 183 Pfam Cytochrome b5-like Heme/Steroid binding domain 58 129 IPR001199 -
Mch7g0872 183 FunFam Cytochrome b5 type B 52 134 - -
Mch7g0872 183 Gene3D - 49 134 IPR036400 -
Mch7g0872 183 PANTHER CYTOCHROME B5 53 176 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Mch7g0872 183 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 54 130 IPR001199 -
Mch7g0872 183 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 85 92 IPR018506 GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0872 K23490 - - csv:101213506 256.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0510 Mch-Chr5:3382257 Mch7g0872 Mch-Chr7:13249802 1.86E-41 dispersed
Mch6g1825 Mch-Chr6:20818771 Mch7g0872 Mch-Chr7:13249802 2.31E-63 dispersed
Mch7g0872 Mch-Chr7:13249802 Mch8g0144 Mch-Chr8:897967 3.65E-34 dispersed
Mch7g0629 Mch-Chr7:10884682 Mch7g0872 Mch-Chr7:13249802 1.22E-13 transposed
Mch5g0194 Mch-Chr5:1248593 Mch7g0872 Mch-Chr7:13249802 1.10E-75 wgd
Mch6g2268 Mch-Chr6:24772305 Mch7g0872 Mch-Chr7:13249802 3.42E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1825 . 1 135 NADPH P450 reductases AT5G53560 78.5 1.1e-58 222.6
Mch5g0194 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.0e-51 199.5
Mch7g0872 . 50 184 NADPH P450 reductases AT5G53560 66.7 9.7e-50 193.0
Mch6g2268 . 8 136 NADPH P450 reductases AT5G53560 65.9 1.3e-46 182.6
Mch6g2268 . 3 134 NADPH P450 reductases AT5G48810 62.7 7.3e-48 186.8
Mch7g0872 . 50 182 NADPH P450 reductases AT5G48810 63.0 2.1e-47 185.3
Mch5g0194 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.8e-47 184.9
Mch6g1825 . 1 134 NADPH P450 reductases AT5G48810 58.1 3.7e-44 174.5
Mch5g0510 . 176 312 NADPH P450 reductases AT5G48810 51.1 7.6e-37 150.2
Mch5g0194 . 22 135 NADPH P450 reductases AT2G32720 84.2 6.7e-51 196.8
Mch7g0872 . 71 182 NADPH P450 reductases AT2G32720 78.6 1.3e-46 182.6
Mch6g2268 . 23 134 NADPH P450 reductases AT2G32720 69.6 3.4e-42 167.9
Mch6g1825 . 22 133 NADPH P450 reductases AT2G32720 66.1 7.0e-40 160.2
Mch8g0144 . 1 130 NADPH P450 reductases AT1G26340 59.7 1.1e-40 162.9
Mch5g1349 . 2 243 NADPH P450 reductases AT5G17770 87.6 1.9e-124 442.2
Mch6g1825 . 1 135 NADPH P450 reductases AT5G53560 78.5 1.1e-58 222.6
Mch5g0194 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.0e-51 199.5
Mch7g0872 . 50 184 NADPH P450 reductases AT5G53560 66.7 9.7e-50 193.0
Mch6g2268 . 8 136 NADPH P450 reductases AT5G53560 65.9 1.3e-46 182.6
Mch6g2268 . 3 134 NADPH P450 reductases AT5G48810 62.7 7.3e-48 186.8
Mch7g0872 . 50 182 NADPH P450 reductases AT5G48810 63.0 2.1e-47 185.3
Mch5g0194 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.8e-47 184.9
Mch6g1825 . 1 134 NADPH P450 reductases AT5G48810 58.1 3.7e-44 174.5
Mch5g0510 . 176 312 NADPH P450 reductases AT5G48810 51.1 7.6e-37 150.2
Mch5g0194 . 22 135 NADPH P450 reductases AT2G32720 84.2 6.7e-51 196.8
Mch7g0872 . 71 182 NADPH P450 reductases AT2G32720 78.6 1.3e-46 182.6
Mch6g2268 . 23 134 NADPH P450 reductases AT2G32720 69.6 3.4e-42 167.9
Mch6g1825 . 22 133 NADPH P450 reductases AT2G32720 66.1 7.0e-40 160.2
Mch8g0144 . 1 130 NADPH P450 reductases AT1G26340 59.7 1.1e-40 162.9
Mch5g1349 . 2 243 NADPH P450 reductases AT5G17770 87.6 1.9e-124 442.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156