Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch7g0880 ATGGCGGCACTCAGTAGATGGTCGTCTCTGTCGTTGGTCGCGCTTGCAATGGTGTTCTTCGTAACAATGGCTCTGGTTCGCAGAGAACAGACCTCCGAAATTAGGACTGAGTTAGCGGCAGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGGCGAGGGTGGAGAATGATGATGTGGAGAAACTAAAAAATGAGCATGCTGTGGATAATCCTGATGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGGTTCTTCTCCTGTGGAACTGGGAATCCCATTGATGACTGCTGGCGTTGCGACTCCAACTGGCACCGCAACCGTAAGCGCCTTGCCGAATGCGGCATTGGGTTCGGTCGGAATGCAATCGGTGGTCGTGATGGACGTTTCTACGTCGTCACTGATTCGAGCGACAACGATCCGGTGAACCCGAAGCCAGGGACACTGCGTCATGCTGTGATCCAAGAGAAACCTCTATGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAGCAGGAACTCATCATGAACAGTTTTAAAACCATTGACGCTCGTGGGGTCAATGTACACATAGCTAATGGCGCTTGCATCACAATCCAGTTTGTGACCAATATCATCATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAACGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGGACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTTATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCACTTTGGAGAGGGACTCATCCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACACACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAATAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACTAAGCGAGTCGAAACAGCGGAGAGCGAATGGAAGGGATGGAACTGGAGATCAGAAGGAGACATGTTGCTGAATGGAGCTTATTTCACCCCATCAGGTGCTGGAGCTTCTGCAAGCTACGCCAGAGCCTCCAGCCTAGGAGCCAAGTCTGCTTCCATGGTTGGATCCATCACATCTTCTGCAGGTTCGCTCCCGTGCCGCCGAGGCCATCCCTGCTAG 1347 49.52 MAALSRWSSLSLVALAMVFFVTMALVRREQTSEIRTELAAEFQSSSNSSMAARVENDDVEKLKNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13370018 13373898 + MC07g0529 Mch7g0880 693218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch7g0880 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Mch7g0880 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Mch7g0880 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Mch7g0880 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Mch7g0880 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Mch7g0880 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Mch7g0880 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Mch7g0880 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Mch7g0880 448 PANTHER PECTATE LYASE 18-RELATED 17 445 IPR045032 GO:0030570(InterPro)
Mch7g0880 448 Pfam Pectate lyase 186 363 IPR002022 -
Mch7g0880 448 SMART amb_all 174 371 IPR002022 -
Mch7g0880 448 Gene3D - 99 441 IPR012334 -
Mch7g0880 448 FunFam Pectate lyase 99 441 - -
Mch7g0880 448 SUPERFAMILY Pectin lyase-like 76 442 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0854 Mch-Chr1:11940801 Mch7g0880 Mch-Chr7:13370018 4.07E-186 dispersed
Mch7g0880 Mch-Chr7:13370018 Mch8g0067 Mch-Chr8:378620 5.48E-208 dispersed
Mch5g0169 Mch-Chr5:1075846 Mch7g0880 Mch-Chr7:13370018 9.58E-277 wgd
Mch6g2290 Mch-Chr6:24906742 Mch7g0880 Mch-Chr7:13370018 2.06E-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch7g0880 K01728 - csv:101217580 872.848